Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HNY42_RS06690 Genome accession   NZ_CP053557
Coordinates   1303128..1304171 (+) Length   347 a.a.
NCBI ID   WP_131503026.1    Uniprot ID   -
Organism   Exiguobacterium sp. Helios     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1298128..1309171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNY42_RS06665 (HNY42_06665) ymfI 1298569..1299273 (+) 705 WP_188005293.1 elongation factor P 5-aminopentanone reductase -
  HNY42_RS06670 (HNY42_06670) - 1299335..1300150 (+) 816 WP_251135835.1 DUF3388 domain-containing protein -
  HNY42_RS06675 (HNY42_06675) - 1300178..1301068 (+) 891 WP_131503028.1 helix-turn-helix domain-containing protein -
  HNY42_RS06680 (HNY42_06680) pgsA 1301133..1301711 (+) 579 WP_114596239.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HNY42_RS06685 (HNY42_06685) - 1301782..1303026 (+) 1245 WP_188005294.1 competence/damage-inducible protein A -
  HNY42_RS06690 (HNY42_06690) recA 1303128..1304171 (+) 1044 WP_131503026.1 recombinase RecA Machinery gene
  HNY42_RS06695 (HNY42_06695) rny 1304365..1305927 (+) 1563 WP_012369930.1 ribonuclease Y -
  HNY42_RS06700 (HNY42_06700) - 1305979..1306773 (+) 795 WP_188005295.1 TIGR00282 family metallophosphoesterase -
  HNY42_RS06705 (HNY42_06705) - 1306803..1307063 (+) 261 WP_131503025.1 stage V sporulation protein S -
  HNY42_RS06710 (HNY42_06710) - 1307266..1309017 (+) 1752 WP_131503184.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37774.93 Da        Isoelectric Point: 5.0885

>NTDB_id=445124 HNY42_RS06690 WP_131503026.1 1303128..1304171(+) (recA) [Exiguobacterium sp. Helios]
MSDRKAALEMALRQIEKQFGKGSIMKLGESPDQRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTVSLHAIAE
VQKQGGQAAFIDAEHALDPAYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRT
KLKVVKNKIAPPFKQAEVDIMYGQGISKFGELIDLGTELDIVQKSGAWYSYNSERLGQGRENAKQYMIEHPDVADEVERL
IREHHGLVDRKEPVDFEEGQDEDLFAE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=445124 HNY42_RS06690 WP_131503026.1 1303128..1304171(+) (recA) [Exiguobacterium sp. Helios]
GTGAGTGATCGTAAAGCAGCACTTGAGATGGCATTACGCCAGATTGAGAAACAATTTGGTAAAGGTTCAATCATGAAACT
AGGTGAAAGTCCAGATCAGAGAGTATCCGTAATCTCTTCTGGATCCATCACATTAGATATAGCGCTCGGTGCAGGTGGAT
ATCCACGTGGACGGGTAATCGAAGTCTATGGTCCGGAATCTTCTGGTAAAACGACAGTCTCGCTTCATGCGATTGCTGAA
GTTCAAAAACAAGGCGGGCAGGCAGCATTCATCGATGCCGAACATGCACTGGATCCTGCTTATGCCAGCAAACTCGGTGT
CAACATCGATGAGTTACTGTTATCACAACCGGATACAGGAGAACAGGCACTTGAAATCGCGGAAGCTTTAGTCCGTTCAG
GAGCTGTCGATATCCTCGTTGTCGACTCAGTAGCTGCACTTGTTCCGAAAGCCGAGATCGAAGGCGAAATGGGTGACTCG
CATATGGGTCTGCAAGCCCGTTTGATGAGTCAGGCGTTACGTAAATTGTCGGGTGCGACAAACAAATCAAAAACAATCGT
CATCTTCATCAACCAGATTCGTGAAAAAATTGGTGTTATGTTCGGTAACCCGGAAACGACTCCAGGTGGACGTGCCTTGA
AGTTCTACTCATCTGTCCGTCTTGAAGTCCGTCGTGCAGAAGCCTTGAAAAACGGTACAGATATCGTCGGAAACCGGACG
AAACTGAAAGTCGTTAAAAACAAAATCGCTCCGCCGTTCAAACAAGCGGAAGTCGATATCATGTATGGACAAGGTATCTC
GAAATTTGGTGAATTGATTGATCTTGGAACAGAACTTGATATCGTCCAAAAAAGTGGTGCTTGGTATTCATACAATTCAG
AGCGTCTTGGTCAAGGACGTGAAAATGCAAAACAATACATGATCGAACATCCGGATGTTGCGGATGAGGTCGAACGATTG
ATTCGTGAACATCACGGTCTCGTCGATCGGAAAGAACCGGTTGACTTTGAAGAAGGTCAAGACGAAGATCTGTTTGCAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.875

94.236

0.781
  recA Latilactobacillus sakei subsp. sakei 23K

72.807

98.559

0.718
  recA Streptococcus pneumoniae Rx1

66.571

100

0.666
  recA Streptococcus pneumoniae D39

66.571

100

0.666
  recA Streptococcus pneumoniae R6

66.571

100

0.666
  recA Streptococcus pneumoniae TIGR4

66.571

100

0.666
  recA Streptococcus mitis NCTC 12261

67.164

96.542

0.648
  recA Streptococcus mitis SK321

67.164

96.542

0.648
  recA Streptococcus pyogenes NZ131

67.988

94.524

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.269

96.542

0.64
  recA Streptococcus mutans UA159

66.265

95.677

0.634
  recA Acinetobacter baumannii D1279779

63.188

99.424

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

92.507

0.614
  recA Vibrio cholerae strain A1552

66.355

92.507

0.614
  recA Neisseria gonorrhoeae MS11

64.134

94.813

0.608
  recA Neisseria gonorrhoeae MS11

64.134

94.813

0.608
  recA Neisseria gonorrhoeae strain FA1090

64.134

94.813

0.608
  recA Acinetobacter baylyi ADP1

64.923

93.66

0.608
  recA Ralstonia pseudosolanacearum GMI1000

66.773

90.202

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

94.236

0.594
  recA Pseudomonas stutzeri DSM 10701

63.438

92.219

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.27

93.948

0.585
  recA Glaesserella parasuis strain SC1401

63.636

91.931

0.585
  recA Helicobacter pylori strain NCTC11637

62.154

93.66

0.582
  recA Helicobacter pylori 26695

61.846

93.66

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

91.066

0.559