Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HK440_RS01665 Genome accession   NZ_CP053396
Coordinates   366523..367566 (+) Length   347 a.a.
NCBI ID   WP_001916756.1    Uniprot ID   -
Organism   Helicobacter pylori strain HPY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 361523..372566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK440_RS01630 (HK440_01630) - 362115..362333 (+) 219 WP_001847091.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HK440_RS01635 (HK440_01635) ccoP 362335..363213 (+) 879 WP_000346803.1 cytochrome-c oxidase, cbb3-type subunit III -
  HK440_RS01640 (HK440_01640) - 363224..363430 (+) 207 WP_000670500.1 DUF4006 family protein -
  HK440_RS01645 (HK440_01645) - 363531..364115 (+) 585 WP_001916759.1 hypothetical protein -
  HK440_RS01650 (HK440_01650) - 364127..364708 (+) 582 WP_001916758.1 hypothetical protein -
  HK440_RS01655 (HK440_01655) - 364797..365564 (+) 768 WP_025449249.1 hypothetical protein -
  HK440_RS01660 (HK440_01660) - 365561..366424 (-) 864 WP_001916757.1 menaquinone biosynthesis family protein -
  HK440_RS01665 (HK440_01665) recA 366523..367566 (+) 1044 WP_001916756.1 recombinase RecA Machinery gene
  HK440_RS01670 (HK440_01670) eno 367579..368859 (+) 1281 WP_001916755.1 phosphopyruvate hydratase -
  HK440_RS01675 (HK440_01675) - 368852..369127 (+) 276 WP_001916754.1 hypothetical protein -
  HK440_RS01680 (HK440_01680) - 369144..369740 (+) 597 WP_001916753.1 AMIN domain-containing protein -
  HK440_RS01685 (HK440_01685) - 369745..370233 (+) 489 WP_001164289.1 shikimate kinase -
  HK440_RS01690 (HK440_01690) - 370255..371211 (+) 957 WP_000952277.1 PDC sensor domain-containing protein -
  HK440_RS01695 (HK440_01695) rfaJ 371208..372326 (-) 1119 WP_001916752.1 HP0159 family lipopolysaccharide 1,6-glucosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37652.41 Da        Isoelectric Point: 5.5188

>NTDB_id=444774 HK440_RS01665 WP_001916756.1 366523..367566(+) (recA) [Helicobacter pylori strain HPY]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTQNLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=444774 HK440_RS01665 WP_001916756.1 366523..367566(+) (recA) [Helicobacter pylori strain HPY]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATTTAGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGTTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAACATGCCCTAGATGTGTATTATGCTAAGAG
ATTGGGCGTGGATACGCAAAATTTACTCGTTTCCCAACCAAGCACAGGCGAAGAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCCCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAGATGAA
CACTACTCTCATTTTTATCAATCAAATCAGAATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCTGCTTTAAAACAAAACGAACAGCATATC
GGTAATAGGGCTAAAGCTAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGATATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCAGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGCTCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

98.847

100

0.988
  recA Helicobacter pylori 26695

98.271

100

0.983
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.354

94.524

0.741
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.846

93.66

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

64.308

93.66

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

95.677

0.602
  recA Acinetobacter baumannii D1279779

63.609

94.236

0.599
  recA Acinetobacter baylyi ADP1

63.303

94.236

0.597
  recA Ralstonia pseudosolanacearum GMI1000

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

59.649

98.559

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.714

96.83

0.588
  recA Vibrio cholerae strain A1552

60.714

96.83

0.588
  recA Glaesserella parasuis strain SC1401

60.061

94.524

0.568
  recA Streptococcus pneumoniae D39

55.556

100

0.562
  recA Streptococcus pneumoniae Rx1

55.556

100

0.562
  recA Streptococcus pneumoniae R6

55.556

100

0.562
  recA Streptococcus pneumoniae TIGR4

55.556

100

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

54.342

100

0.559
  recA Streptococcus pyogenes NZ131

57.273

95.101

0.545
  recA Lactococcus lactis subsp. cremoris KW2

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.143

94.813

0.542
  recA Streptococcus mitis SK321

56.839

94.813

0.539
  recA Streptococcus mutans UA159

55.689

96.254

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

93.948

0.524