Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HL650_RS10895 Genome accession   NZ_CP053228
Coordinates   2208065..2209198 (-) Length   377 a.a.
NCBI ID   WP_065541189.1    Uniprot ID   A0A1C7I7J7
Organism   Blautia pseudococcoides strain SCSK     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2199080..2223489 2208065..2209198 within 0


Gene organization within MGE regions


Location: 2199080..2223489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HL650_RS10855 (HL650_10895) - 2199080..2200462 (-) 1383 WP_065541197.1 M56 family metallopeptidase -
  HL650_RS10860 (HL650_10900) - 2200475..2200834 (-) 360 WP_104805760.1 BlaI/MecI/CopY family transcriptional regulator -
  HL650_RS10865 (HL650_10905) - 2200873..2202219 (-) 1347 WP_171285908.1 NlpC/P60 family protein -
  HL650_RS10870 (HL650_10910) - 2202519..2203550 (+) 1032 WP_065541195.1 3-deoxy-7-phosphoheptulonate synthase -
  HL650_RS10875 (HL650_10915) xerD 2203695..2204579 (-) 885 WP_065541194.1 site-specific tyrosine recombinase XerD -
  HL650_RS10880 (HL650_10920) - 2204861..2205430 (-) 570 WP_065541192.1 stage II sporulation protein M -
  HL650_RS10885 (HL650_10925) rny 2205624..2207183 (-) 1560 WP_065541191.1 ribonuclease Y -
  HL650_RS10890 (HL650_10930) - 2207312..2207923 (-) 612 WP_065541190.1 regulatory protein RecX -
  HL650_RS10895 (HL650_10935) recA 2208065..2209198 (-) 1134 WP_065541189.1 recombinase RecA Machinery gene
  HL650_RS10900 (HL650_10940) - 2209562..2209819 (-) 258 WP_065541188.1 spore coat protein -
  HL650_RS10905 (HL650_10945) - 2209833..2210018 (-) 186 WP_065541187.1 hypothetical protein -
  HL650_RS10910 (HL650_10950) - 2210105..2212105 (-) 2001 WP_065541186.1 FtsX-like permease family protein -
  HL650_RS10915 (HL650_10955) - 2212095..2212862 (-) 768 WP_065544624.1 ABC transporter ATP-binding protein -
  HL650_RS10920 (HL650_10960) - 2213306..2215270 (+) 1965 WP_171285909.1 sodium-translocating pyrophosphatase -
  HL650_RS10925 (HL650_10965) - 2215333..2216349 (-) 1017 WP_171285910.1 sensor histidine kinase -
  HL650_RS10930 (HL650_10970) - 2216346..2217014 (-) 669 WP_171285911.1 response regulator transcription factor -
  HL650_RS10935 (HL650_10980) glgA 2217933..2219378 (-) 1446 WP_065541182.1 glycogen synthase GlgA -
  HL650_RS10940 (HL650_10985) spo0A 2219525..2220319 (-) 795 WP_033141185.1 sporulation transcription factor Spo0A -
  HL650_RS10945 (HL650_10990) spoIVB 2220519..2221721 (-) 1203 WP_243172907.1 SpoIVB peptidase -
  HL650_RS10950 (HL650_10995) recN 2221804..2223489 (-) 1686 WP_065541181.1 DNA repair protein RecN -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40554.40 Da        Isoelectric Point: 7.0701

>NTDB_id=443622 HL650_RS10895 WP_065541189.1 2208065..2209198(-) (recA) [Blautia pseudococcoides strain SCSK]
MVKEDKLKALDAALGQIEKQFGKGSVMKLGDSSLHMNVETVPTGSLSLDIALGLGGIPRGRVVEVYGPESSGKTTVALHM
VAEVQKRGGIAGFIDAEHALDPVYARHIGVDVDNLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPRAEIEGDM
GDSHVGLQARLMSQALRKLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRIEALKQGGEIVG
NRTRIKVVKNKIAPPFKEAEFDIMFGQGISKAGDILDLAANLGIINKSGAWYAYKDGKIGQGRENAKQYLKENPEVAEEV
EAKVREHYGLTEGKTEKESSKDTKEKKADAKVSAAKAPDLKAAEISAVQSAKKGNEE

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=443622 HL650_RS10895 WP_065541189.1 2208065..2209198(-) (recA) [Blautia pseudococcoides strain SCSK]
ATGGTCAAAGAAGATAAATTAAAAGCCCTGGACGCGGCTTTGGGTCAGATTGAAAAGCAGTTTGGTAAAGGCTCTGTTAT
GAAACTGGGCGATTCCTCTTTACATATGAATGTGGAGACTGTACCAACAGGCTCCCTGAGCCTTGATATTGCCCTGGGAC
TGGGCGGTATCCCCAGAGGAAGAGTAGTGGAAGTCTACGGACCGGAATCCAGTGGTAAGACCACAGTGGCGCTGCATATG
GTGGCAGAGGTGCAGAAGAGGGGCGGAATCGCAGGCTTTATTGATGCGGAGCACGCTTTGGACCCTGTATATGCCAGACA
TATCGGTGTGGATGTGGACAATCTTTATATTTCCCAGCCGGATAACGGTGAGCAGGCTCTGGAGATTACAGAGACCATGG
TACGCTCCGGCGCTGTGGATATTGTGATCGTGGACTCTGTTGCAGCTCTGGTTCCAAGGGCGGAGATTGAAGGTGATATG
GGAGATTCCCATGTGGGCCTCCAGGCGCGTCTGATGTCACAGGCTCTCCGTAAACTGACAGCGGTCATCAGCAAATCCAA
CTGTATCGTTATCTTTATCAATCAGCTTCGTGAGAAGGTGGGCGTAATGTTCGGTAATCCTGAGACCACTACAGGCGGAC
GTGCCCTGAAGTTCTATTCCTCCATCCGTCTGGATGTGAGAAGGATTGAGGCCCTGAAGCAGGGCGGTGAGATTGTGGGT
AACCGTACCAGGATCAAAGTGGTTAAGAATAAGATCGCACCTCCGTTTAAAGAGGCGGAGTTTGATATCATGTTCGGCCA
GGGAATCTCAAAAGCCGGGGATATTCTGGATTTGGCGGCAAATCTGGGAATCATAAACAAAAGCGGCGCCTGGTATGCAT
ATAAGGATGGAAAGATTGGCCAGGGACGCGAGAATGCCAAACAGTATTTGAAAGAGAATCCAGAGGTGGCAGAAGAAGTG
GAAGCAAAAGTCCGGGAACACTACGGACTCACAGAAGGAAAGACAGAAAAAGAGAGCAGCAAAGATACAAAAGAAAAGAA
GGCTGATGCCAAAGTTTCTGCAGCCAAAGCACCGGATCTGAAAGCCGCGGAGATATCTGCTGTCCAGAGTGCAAAGAAAG
GAAATGAGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7I7J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.552

86.472

0.61
  recA Streptococcus pneumoniae R6

64.08

92.308

0.592
  recA Streptococcus pneumoniae Rx1

64.08

92.308

0.592
  recA Streptococcus pneumoniae D39

64.08

92.308

0.592
  recA Streptococcus pneumoniae TIGR4

64.08

92.308

0.592
  recA Streptococcus mitis SK321

65.192

89.92

0.586
  recA Streptococcus mitis NCTC 12261

64.897

89.92

0.584
  recA Streptococcus mutans UA159

62.5

93.369

0.584
  recA Neisseria gonorrhoeae MS11

62.751

92.573

0.581
  recA Neisseria gonorrhoeae strain FA1090

62.751

92.573

0.581
  recA Neisseria gonorrhoeae MS11

62.751

92.573

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

65.663

88.064

0.578
  recA Pseudomonas stutzeri DSM 10701

61.605

92.573

0.57
  recA Glaesserella parasuis strain SC1401

62.682

90.981

0.57
  recA Acinetobacter baumannii D1279779

64.545

87.533

0.565
  recA Acinetobacter baylyi ADP1

61.808

90.981

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.635

85.676

0.562
  recA Vibrio cholerae strain A1552

65.635

85.676

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

87.003

0.557
  recA Lactococcus lactis subsp. cremoris KW2

63.222

87.268

0.552
  recA Streptococcus pyogenes NZ131

62.727

87.533

0.549
  recA Ralstonia pseudosolanacearum GMI1000

65.397

83.554

0.546
  recA Helicobacter pylori strain NCTC11637

61.747

88.064

0.544
  recA Helicobacter pylori 26695

61.446

88.064

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.733

85.411

0.536
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.212

87.533

0.536