Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EGM87_RS12785 Genome accession   NZ_CP053222
Coordinates   2640668..2641741 (-) Length   357 a.a.
NCBI ID   WP_025547442.1    Uniprot ID   -
Organism   Sphingobium sp. RSMS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2635668..2646741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM87_RS12780 (EGM87_12755) - 2636047..2640234 (+) 4188 WP_137710207.1 translocation/assembly module TamB domain-containing protein -
  EGM87_RS12785 (EGM87_12760) recA 2640668..2641741 (-) 1074 WP_025547442.1 recombinase RecA Machinery gene
  EGM87_RS12790 (EGM87_12765) - 2641841..2642200 (-) 360 WP_025547444.1 response regulator -
  EGM87_RS12795 (EGM87_12770) - 2642291..2644642 (-) 2352 WP_137710206.1 response regulator -
  EGM87_RS12800 (EGM87_12775) - 2644691..2645284 (-) 594 WP_025547448.1 DUF2062 domain-containing protein -
  EGM87_RS12805 (EGM87_12780) smpB 2645284..2645766 (-) 483 WP_007683053.1 SsrA-binding protein SmpB -
  EGM87_RS12810 (EGM87_12785) dapA 2645811..2646689 (-) 879 WP_061937872.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38285.93 Da        Isoelectric Point: 5.3668

>NTDB_id=443611 EGM87_RS12785 WP_025547442.1 2640668..2641741(-) (recA) [Sphingobium sp. RSMS]
MTAMLSLIDSKKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKIEIEAISTGSLGLDIALGIGGLPRGRIVEIYGPE
SSGKTTLALHAIAEAQKTGGIAAFVDAEHALDPGYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDREDIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKAGLVEKSGAWFSYDSVRIGQGRENAKTF
LKEHPEMADKLEKAIRGKTEEVAEGMMAGPEAEDDGE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=443611 EGM87_RS12785 WP_025547442.1 2640668..2641741(-) (recA) [Sphingobium sp. RSMS]
ATGACCGCAATGCTCTCACTCATCGATTCCAAGAAGACAGGGACAATGGACAGACAGAAAGCATTGGAAGCGGCCCTTTC
CCAGATCGACCGTGCCTTCGGCAAGGGGTCGGCCATGAAGCTGGGCAGCCGCGAGAAGATCGAGATCGAGGCGATCTCGA
CCGGATCGCTGGGGCTGGACATCGCGCTTGGCATTGGTGGCCTGCCGCGCGGACGTATTGTGGAGATTTATGGCCCGGAA
AGCTCGGGCAAGACCACGCTGGCGCTGCACGCCATTGCAGAAGCGCAGAAGACCGGCGGCATCGCAGCCTTTGTCGATGC
GGAACATGCACTCGATCCGGGCTATGCGAAGAAGCTAGGCGTCGACATCGACGAACTGATCGTATCGCAGCCGGATACCG
GTGAGCAGGCGCTGGAGATCGTCGACACGCTGGTGCGCTCCAATGCCATCGACGTGCTGGTGGTGGACTCGGTCGCCGCG
CTGGTTCCGCGTGCCGAAATCGAGGGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTGACCGGCTCCATCTCCCGCTCGCGCTGTCTGGTGATCTTCATCAACCAGGTCCGCATGAAGATCGGCGTCA
TGTACGGCAATCCCGAAACGACGACGGGCGGCAACGCGCTCAAATTCTACGCCTCGGTCCGCCTCGACATCCGTCGCACC
GGTCAGATCAAGGATCGTGAGGACATTGTCGGCAACGCGACCCGCGTGAAAGTGGTCAAGAACAAGGTCGCGCCGCCCTT
CAAGCAGGTCGAATTCGACATCATGTATGGCGAGGGCGTGTCCAAGATCGGCGAACTGCTCGACATCGGCGTGAAGGCTG
GGCTGGTCGAGAAGTCGGGCGCCTGGTTCTCCTATGACTCGGTTCGCATCGGGCAAGGTCGCGAGAATGCGAAAACCTTT
CTGAAAGAACATCCCGAAATGGCGGACAAGCTGGAAAAGGCGATCCGCGGAAAGACCGAGGAGGTCGCCGAAGGGATGAT
GGCCGGACCCGAAGCGGAGGATGATGGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

68.129

95.798

0.653
  recA Neisseria gonorrhoeae MS11

68.129

95.798

0.653
  recA Neisseria gonorrhoeae MS11

68.129

95.798

0.653
  recA Pseudomonas stutzeri DSM 10701

68.047

94.678

0.644
  recA Glaesserella parasuis strain SC1401

71.16

89.356

0.636
  recA Vibrio cholerae strain A1552

70

89.636

0.627
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70

89.636

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.497

95.798

0.627
  recA Ralstonia pseudosolanacearum GMI1000

66.364

92.437

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.061

92.437

0.611
  recA Acinetobacter baylyi ADP1

67.812

89.636

0.608
  recA Streptococcus pneumoniae TIGR4

62.791

96.359

0.605
  recA Streptococcus pneumoniae Rx1

62.791

96.359

0.605
  recA Streptococcus pneumoniae D39

62.791

96.359

0.605
  recA Streptococcus pneumoniae R6

62.791

96.359

0.605
  recA Acinetobacter baumannii D1279779

67.5

89.636

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

66.875

89.636

0.599
  recA Helicobacter pylori strain NCTC11637

64.848

92.437

0.599
  recA Streptococcus mitis NCTC 12261

61.919

96.359

0.597
  recA Streptococcus mitis SK321

61.383

97.199

0.597
  recA Helicobacter pylori 26695

64.545

92.437

0.597
  recA Streptococcus pyogenes NZ131

62.162

93.277

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.747

92.997

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

63.75

89.636

0.571
  recA Streptococcus mutans UA159

61.027

92.717

0.566
  recA Lactococcus lactis subsp. cremoris KW2

60.725

92.717

0.563