Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FRAAU_RS03680 Genome accession   NC_017033
Coordinates   817840..818886 (+) Length   348 a.a.
NCBI ID   WP_014402225.1    Uniprot ID   H8KZB5
Organism   Frateuria aurantia DSM 6220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 812840..823886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRAAU_RS03650 (Fraau_0740) - 812893..813282 (-) 390 WP_014402219.1 cytochrome C'' -
  FRAAU_RS03655 (Fraau_0741) - 813375..814208 (+) 834 WP_245546430.1 tRNA threonylcarbamoyladenosine dehydratase -
  FRAAU_RS03660 (Fraau_0742) phbB 814232..814975 (-) 744 WP_014402221.1 acetoacetyl-CoA reductase -
  FRAAU_RS03665 (Fraau_0743) gluQRS 815385..816254 (-) 870 WP_014402222.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  FRAAU_RS03670 (Fraau_0744) - 816384..817034 (-) 651 WP_014402223.1 thiol:disulfide interchange protein DsbA/DsbL -
  FRAAU_RS03675 (Fraau_0745) - 817195..817692 (+) 498 WP_041270350.1 nicotinamide-nucleotide amidohydrolase family protein -
  FRAAU_RS03680 (Fraau_0746) recA 817840..818886 (+) 1047 WP_014402225.1 recombinase RecA Machinery gene
  FRAAU_RS03685 (Fraau_0747) - 818947..819465 (+) 519 WP_014402226.1 regulatory protein RecX -
  FRAAU_RS03690 (Fraau_0748) alaS 819859..822507 (+) 2649 WP_041270351.1 alanine--tRNA ligase -
  FRAAU_RS03695 (Fraau_0749) csrA 822772..822993 (+) 222 WP_014402228.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37446.74 Da        Isoelectric Point: 5.5972

>NTDB_id=44312 FRAAU_RS03680 WP_014402225.1 817840..818886(+) (recA) [Frateuria aurantia DSM 6220]
MDDNKRRALTSALGQIEKQFGKGAVMRLGDRTEEKIDTVSTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLTLQVIA
NCQKNGGTAAFVDAEHALDPTYAEKLGVKVEDLLISQPDTGEQALEIADMLVRSGAVDVVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSNCLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGDEVIGSE
TRVKVVKNKVAPPFRQTEFEILYGEGTSREGEIIELGVRENLIDKAGAWYSYKGDRIGQGKENVRQFLRDNPAIADEVDT
ELRARLLVSAKPKPAEAEAEAAAAKDEA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=44312 FRAAU_RS03680 WP_014402225.1 817840..818886(+) (recA) [Frateuria aurantia DSM 6220]
ATGGATGACAACAAGCGTCGCGCGCTGACTTCGGCCCTTGGCCAGATCGAAAAACAATTCGGCAAGGGTGCGGTGATGCG
TCTGGGCGACCGCACCGAAGAGAAGATCGACACGGTATCGACCGGCTCGCTGGGTCTGGACATCGCCTTGGGCGTCGGTG
GTCTGCCGCGCGGCCGGATCGTGGAAATCTACGGCCCCGAGTCGTCGGGCAAGACCACCTTGACTCTGCAGGTGATCGCC
AACTGCCAGAAGAACGGGGGCACCGCGGCCTTCGTCGATGCCGAGCATGCTCTGGATCCGACCTATGCCGAAAAACTGGG
CGTCAAGGTCGAGGATCTGCTGATTTCCCAGCCCGACACCGGTGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CGGGCGCGGTCGACGTGGTTGTGGTCGACTCGGTGGCGGCGTTGACCCCCAAAGCCGAAATCGAGGGCGAGATGGGCGAC
TCTCATGTCGGCCTGCATGCGCGACTGATGAGCCAGGCCCTGCGCAAGCTGACCGCCAACATCAAGAAGTCGAACTGTCT
GGTGGTCTTCATCAACCAGATTCGCATGAAGATCGGTGTGATGTTCGGCAGCCCCGAAACCACCACCGGCGGCAATGCCC
TGAAGTTCTACGCTTCGGTGCGTCTGGATATCCGCCGCATCGGTGCGGTCAAGAAGGGCGATGAGGTGATCGGTTCGGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGACCGAGTTCGAGATTCTCTACGGTGAGGGTAC
CTCGCGTGAAGGCGAGATCATCGAGCTGGGTGTGCGCGAGAACCTGATCGACAAGGCTGGTGCCTGGTACAGCTACAAGG
GTGATCGCATCGGGCAGGGCAAGGAGAATGTCCGCCAGTTCCTGCGTGACAATCCGGCGATTGCCGACGAGGTCGACACC
GAGCTGCGTGCCCGTCTGCTGGTCAGTGCCAAGCCCAAGCCGGCCGAAGCCGAAGCCGAAGCCGCCGCTGCCAAAGACGA
GGCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8KZB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.855

99.425

0.744
  recA Ralstonia pseudosolanacearum GMI1000

72.781

97.126

0.707
  recA Acinetobacter baylyi ADP1

73.134

96.264

0.704
  recA Neisseria gonorrhoeae MS11

74.769

93.391

0.698
  recA Neisseria gonorrhoeae MS11

74.769

93.391

0.698
  recA Neisseria gonorrhoeae strain FA1090

74.769

93.391

0.698
  recA Acinetobacter baumannii D1279779

70.588

97.701

0.69
  recA Glaesserella parasuis strain SC1401

68.786

99.425

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.012

99.713

0.678
  recA Vibrio cholerae strain A1552

68.012

99.713

0.678
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.771

91.667

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.115

0.609
  recA Helicobacter pylori strain NCTC11637

64.506

93.103

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

65.312

91.954

0.601
  recA Helicobacter pylori 26695

64.198

93.103

0.598
  recA Streptococcus mitis NCTC 12261

58.96

99.425

0.586
  recA Streptococcus mutans UA159

62.08

93.966

0.583
  recA Streptococcus pyogenes NZ131

61.585

94.253

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

60.725

95.115

0.578
  recA Streptococcus mitis SK321

58.092

99.425

0.578
  recA Streptococcus pneumoniae D39

60.736

93.678

0.569
  recA Streptococcus pneumoniae Rx1

60.736

93.678

0.569
  recA Streptococcus pneumoniae R6

60.736

93.678

0.569
  recA Streptococcus pneumoniae TIGR4

60.736

93.678

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.927

94.253

0.546
  recA Lactococcus lactis subsp. cremoris KW2

58.025

93.103

0.54

Multiple sequence alignment