Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   COCOR_RS06720 Genome accession   NC_017030
Coordinates   1625616..1626641 (-) Length   341 a.a.
NCBI ID   WP_014394194.1    Uniprot ID   H8MTL7
Organism   Corallococcus coralloides DSM 2259     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1620616..1631641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COCOR_RS06700 (COCOR_01339) pssA 1621379..1622233 (+) 855 WP_014394190.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  COCOR_RS06705 (COCOR_01340) - 1622291..1623556 (+) 1266 WP_014394191.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  COCOR_RS06710 (COCOR_01341) - 1623745..1625052 (+) 1308 WP_237726569.1 hypothetical protein -
  COCOR_RS06715 (COCOR_01342) - 1625110..1625619 (+) 510 WP_014394193.1 DUF1285 domain-containing protein -
  COCOR_RS06720 (COCOR_01343) recA 1625616..1626641 (-) 1026 WP_014394194.1 recombinase RecA Machinery gene
  COCOR_RS06725 (COCOR_01344) - 1626923..1628302 (+) 1380 WP_014394195.1 NAD(P)/FAD-dependent oxidoreductase -
  COCOR_RS06730 (COCOR_01345) - 1628225..1629862 (-) 1638 WP_014394196.1 YifB family Mg chelatase-like AAA ATPase -
  COCOR_RS06735 (COCOR_01346) - 1630089..1630604 (-) 516 WP_014394197.1 ExbD/TolR family protein -
  COCOR_RS06740 (COCOR_01347) - 1630604..1631017 (-) 414 WP_014394198.1 ExbD/TolR family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 35886.14 Da        Isoelectric Point: 7.0572

>NTDB_id=44297 COCOR_RS06720 WP_014394194.1 1625616..1626641(-) (recA) [Corallococcus coralloides DSM 2259]
MSRLTEKLKAVAAAVASIEKQFGRGAVMTLGADAPEQKVAVIPTGSVGLDRALGVGGYPRGRVVELFGNESSGKTTLTLH
AIAQVQAVGGVAAFIDAEHALDLSYARKLGVRTEELLVAQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQVRMKIGVMFGNPETTTGGNALKFYSSVRMEIRRTGNLKEGDAVV
GSRARVKVVKNKLAPPFQEAEFDVLYGTGIHRAAEVLDLAVSAGVVEKSGSHFSLRGERIGQGRERACEWLREHPDVLEA
LARDLVGATAPAVPAGDAAAA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=44297 COCOR_RS06720 WP_014394194.1 1625616..1626641(-) (recA) [Corallococcus coralloides DSM 2259]
ATGAGCAGGCTGACGGAGAAGTTGAAGGCAGTGGCGGCGGCGGTGGCGTCCATCGAGAAACAGTTCGGACGGGGCGCGGT
GATGACGCTCGGCGCGGACGCACCGGAGCAGAAGGTGGCGGTCATTCCCACGGGGTCGGTGGGATTGGACCGCGCGCTGG
GCGTGGGAGGCTATCCGCGAGGTCGCGTGGTGGAGCTGTTCGGCAACGAGTCCTCCGGCAAGACGACACTCACCCTGCAT
GCCATCGCGCAGGTGCAGGCCGTGGGAGGCGTCGCGGCCTTCATCGACGCGGAGCACGCGCTGGACTTGTCCTACGCGCG
CAAGCTGGGCGTGCGTACGGAGGAACTGCTCGTGGCGCAGCCGGACACCGGGGAGCAGGCGCTCGAAATCACCGAGCAGC
TCGTGCGCTCGGGCGCCGTGGACCTCATCGTGGTGGATTCGGTGGCGGCGCTGGTTCCCCGGGCGGAAATCGAAGGGGAG
ATGGGTGACGCGCACATGGGCGTCCAGGCGCGGCTGATGAGCCAGGCGCTGCGGAAGCTCACGGGCGCGGTGAGCCGCTC
CGGCACCTGCATCATCTTCATCAACCAGGTCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACGACGGGTG
GCAACGCGCTGAAGTTCTATTCGTCGGTGCGCATGGAGATCCGCCGCACGGGCAACCTCAAGGAGGGCGACGCGGTGGTG
GGCTCACGGGCCCGCGTGAAGGTGGTGAAGAACAAGCTGGCGCCCCCGTTCCAGGAGGCGGAGTTCGACGTGCTCTACGG
CACGGGCATCCACCGTGCCGCCGAGGTGCTGGACCTGGCCGTGAGCGCGGGCGTGGTGGAGAAGTCGGGCAGCCACTTCA
GCCTGCGGGGTGAGCGCATCGGCCAGGGCCGTGAGCGGGCGTGCGAGTGGCTGCGGGAGCACCCGGACGTCCTGGAGGCC
CTCGCTCGCGACCTGGTGGGAGCCACCGCGCCCGCCGTGCCGGCCGGGGACGCCGCGGCGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8MTL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

66.032

92.375

0.61
  recA Pseudomonas stutzeri DSM 10701

65.705

91.496

0.601
  recA Acinetobacter baylyi ADP1

63.24

94.135

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.323

93.548

0.592
  recA Vibrio cholerae strain A1552

63.323

93.548

0.592
  recA Acinetobacter baumannii D1279779

62.696

93.548

0.587
  recA Neisseria gonorrhoeae strain FA1090

62.975

92.669

0.584
  recA Neisseria gonorrhoeae MS11

62.975

92.669

0.584
  recA Neisseria gonorrhoeae MS11

62.975

92.669

0.584
  recA Glaesserella parasuis strain SC1401

61.25

93.842

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

61.905

92.375

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.502

94.135

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.057

97.654

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

60.897

91.496

0.557
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.434

93.255

0.554
  recA Helicobacter pylori 26695

56.25

98.534

0.554
  recA Helicobacter pylori strain NCTC11637

56.25

98.534

0.554
  recA Streptococcus pyogenes NZ131

57.143

94.428

0.54
  recA Streptococcus mutans UA159

56.563

93.842

0.531
  recA Streptococcus pneumoniae TIGR4

55.864

95.015

0.531
  recA Streptococcus pneumoniae D39

55.864

95.015

0.531
  recA Streptococcus pneumoniae R6

55.864

95.015

0.531
  recA Streptococcus pneumoniae Rx1

55.864

95.015

0.531
  recA Lactococcus lactis subsp. cremoris KW2

56.25

93.842

0.528
  recA Streptococcus mitis SK321

56.151

92.962

0.522
  recA Streptococcus mitis NCTC 12261

55.312

93.842

0.519

Multiple sequence alignment