Detailed information NTG0044296

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: COCOR_RS06400
• Genome accession: NC_017030
• Coordinates: 1533971..1535056 (+)
• Length: 361 a.a.
• NCBI ID: WP_014394129.1
• Uniprot ID: H8MS27
• Organism: Corallococcus coralloides DSM 2259
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1528971..1540056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COCOR_RS06370 (COCOR_01272)	glmS	1529245..1531080 (+)	1836	WP_014394123.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
COCOR_RS06375 (COCOR_01273)	-	1531162..1531428 (-)	267	WP_014394124.1	hypothetical protein	-
COCOR_RS06380 (COCOR_01274)	-	1531425..1531919 (-)	495	WP_014394125.1	DUF3106 domain-containing protein	-
COCOR_RS06385 (COCOR_01275)	-	1531919..1532398 (-)	480	WP_014394126.1	anti-sigma factor family protein	-
COCOR_RS06390 (COCOR_01276)	-	1532395..1532997 (-)	603	WP_014394127.1	RNA polymerase sigma factor	-
COCOR_RS06395 (COCOR_01277)	-	1533088..1533858 (+)	771	WP_043322664.1	hypothetical protein	-
COCOR_RS06400 (COCOR_01278)	recA	1533971..1535056 (+)	1086	WP_014394129.1	recombinase RecA	Machinery gene
COCOR_RS06405 (COCOR_01279)	-	1535226..1537445 (+)	2220	WP_014394130.1	alkaline phosphatase D family protein	-

Sequence

Protein

• Length: 361 a.a.
• Molecular weight: 38865.64 Da
• Isoelectric Point: 6.8716

>NTDB_id=44296 COCOR_RS06400 WP_014394129.1 1533971..1535056(+) (recA) [Corallococcus coralloides DSM 2259]
MAVNQEKEKAIELALAAVERQFGKGSIMRLGNDEPMMKDVQAISTGSTSLDIALGVGGVPRGRIIEIFGPESSGKTTLCL
HIVAEAQKKGGVCGYIDAEHAMDVGYARKLGVRTDDLLLSQPDTGEQGLEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTISKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRMDIRRVGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGAGISKEGDLIDLASNENIIEKSGSWFSFKGERIGQGRENAKEYLREHPETYK
EVESLVLEKYGIGKTAGAAAPAAEPSEPAEGEKRPRVKAVK

Nucleotide

• Length: 1086 bp

>NTDB_id=44296 COCOR_RS06400 WP_014394129.1 1533971..1535056(+) (recA) [Corallococcus coralloides DSM 2259]
ATGGCCGTGAATCAGGAGAAGGAAAAGGCGATCGAGCTGGCGCTGGCGGCGGTGGAGCGTCAGTTCGGCAAGGGGTCCAT
CATGCGGCTCGGCAACGACGAGCCCATGATGAAGGACGTCCAGGCCATTTCGACGGGGTCCACTTCGCTCGACATCGCCC
TGGGCGTGGGCGGCGTGCCGCGCGGACGCATCATCGAAATCTTCGGGCCGGAGTCCTCCGGCAAGACGACGCTGTGCCTC
CACATCGTCGCGGAAGCGCAGAAGAAGGGCGGCGTGTGCGGCTACATCGACGCGGAGCACGCGATGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGACGACCTGCTCCTGTCCCAGCCGGACACCGGTGAGCAGGGCCTCGAAATCGCGGAGA
TGCTCGTGCGCTCCGGCGCCATCGACGTGCTGGTGGTGGACTCGGTGGCCGCGCTCGTGCCGAAGGCGGAGCTCGAGGGC
GAGATGGGCGATGCGCACATGGGCGTGCAGGCCCGCCTCATGAGCCAGGCGCTCCGCAAGCTCACGGGCACCATCTCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACCACCACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCGCAGCGCATGGACATCCGCCGCGTGGGCGCCATCAAGAACGGCGAGAACGTG
GTGGGCAGCCGCACCCGCGTGAAGGTCGTGAAGAACAAGGTGGCGCCGCCGTTCAAGGAAGTCGAATTCGACATCATGTA
CGGCGCGGGCATCTCGAAGGAGGGTGACCTCATCGACCTGGCCTCCAACGAGAACATCATCGAGAAGAGCGGCAGCTGGT
TCTCCTTCAAGGGAGAGCGCATCGGCCAGGGCCGGGAGAACGCGAAGGAGTACCTGCGCGAGCACCCGGAGACCTACAAG
GAGGTCGAGAGCCTGGTGCTGGAGAAGTACGGCATCGGCAAGACGGCCGGTGCGGCGGCCCCCGCCGCAGAGCCCAGCGA
GCCGGCGGAAGGCGAGAAGCGCCCGCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-272)

3D structure

• AlphaFold DB: H8MS27

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Latilactobacillus sakei subsp. sakei 23K	63.717	93.906	0.598
recA	Ralstonia pseudosolanacearum GMI1000	68.571	87.258	0.598
recA	Vibrio cholerae strain A1552	66.044	88.92	0.587
recA	Vibrio cholerae O1 biovar El Tor strain E7946	66.044	88.92	0.587
recA	Pseudomonas stutzeri DSM 10701	61.988	94.737	0.587
recA	Neisseria gonorrhoeae MS11	64.815	89.751	0.582
recA	Neisseria gonorrhoeae strain FA1090	64.815	89.751	0.582
recA	Neisseria gonorrhoeae MS11	64.815	89.751	0.582
recA	Glaesserella parasuis strain SC1401	60.172	96.676	0.582
recA	Acinetobacter baylyi ADP1	60.405	95.845	0.579
recA	Acinetobacter baumannii D1279779	61.905	93.075	0.576
recA	Streptococcus pneumoniae R6	61.934	91.69	0.568
recA	Streptococcus pneumoniae Rx1	61.934	91.69	0.568
recA	Streptococcus pneumoniae D39	61.934	91.69	0.568
recA	Streptococcus pneumoniae TIGR4	61.934	91.69	0.568
recA	Helicobacter pylori strain NCTC11637	61.747	91.967	0.568
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	61.631	91.69	0.565
recA	Helicobacter pylori 26695	61.145	91.967	0.562
recA	Bacillus subtilis subsp. subtilis str. 168	61.774	90.582	0.56
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	62.037	89.751	0.557
recA	Streptococcus mitis SK321	60.725	91.69	0.557
recA	Streptococcus mitis NCTC 12261	60.725	91.69	0.557
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.241	91.967	0.554
recA	Streptococcus pyogenes NZ131	59.697	91.413	0.546
recA	Lactococcus lactis subsp. cremoris KW2	58.006	91.69	0.532
recA	Streptococcus mutans UA159	57.704	91.69	0.529