Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DSM104440_RS06865 Genome accession   NZ_CP053073
Coordinates   1331224..1332255 (+) Length   343 a.a.
NCBI ID   WP_171165761.1    Uniprot ID   -
Organism   Usitatibacter palustris strain Swamp67     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1326224..1337255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104440_RS06840 (DSM104440_01345) - 1327173..1327919 (+) 747 WP_171161285.1 GNAT family N-acetyltransferase -
  DSM104440_RS06845 (DSM104440_01346) - 1327942..1329414 (-) 1473 WP_171161286.1 carotenoid oxygenase family protein -
  DSM104440_RS06850 (DSM104440_01347) - 1329417..1329836 (-) 420 WP_171161287.1 DUF2141 domain-containing protein -
  DSM104440_RS06855 (DSM104440_01348) - 1329969..1330472 (+) 504 WP_171161288.1 CinA family protein -
  DSM104440_RS06860 (DSM104440_01349) - 1330549..1331136 (+) 588 WP_171161289.1 S24 family peptidase -
  DSM104440_RS06865 (DSM104440_01350) recA 1331224..1332255 (+) 1032 WP_171165761.1 recombinase RecA Machinery gene
  DSM104440_RS06870 (DSM104440_01351) recX 1332299..1332763 (+) 465 WP_171165763.1 recombination regulator RecX -
  DSM104440_RS06875 (DSM104440_01352) - 1332750..1332902 (+) 153 WP_171161290.1 hypothetical protein -
  DSM104440_RS06880 (DSM104440_01353) - 1332909..1333451 (+) 543 WP_171161291.1 cysteine hydrolase family protein -
  DSM104440_RS06885 (DSM104440_01354) - 1333448..1333813 (+) 366 WP_171161292.1 VOC family protein -
  DSM104440_RS06890 (DSM104440_01355) - 1333810..1334292 (+) 483 WP_212758248.1 DUF3224 domain-containing protein -
  DSM104440_RS06895 (DSM104440_01356) - 1334297..1335088 (-) 792 WP_171161293.1 T6SS effector amidase Tae4 family protein -
  DSM104440_RS06900 (DSM104440_01357) - 1335206..1335430 (+) 225 WP_171161294.1 DUF167 domain-containing protein -
  DSM104440_RS06905 (DSM104440_01358) - 1335435..1336511 (+) 1077 WP_171161295.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37124.61 Da        Isoelectric Point: 5.3505

>NTDB_id=442738 DSM104440_RS06865 WP_171165761.1 1331224..1332255(+) (recA) [Usitatibacter palustris strain Swamp67]
MDENKSKALSAALSQIEKQFGKGSIMKMGDRDVSRDIQAVSTGSLGLDMALGIGGLPRGRVCEIYGPESSGKTTLTLQVI
ANIQKLGGTAAFIDAEHALDPQYAQRLGVDISELLLSQPDNGEQALEIADMLVRSGSVDCVVVDSVAALTPKAEIEGEMG
EPQMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGN
ETRVKVVKNKVAPPFRVADFDILYNEGISREGEIIEMGVIHRIVEKSGAWYAYNGEKIGQGKDNAREFLKENPAISQEIE
RKIREAIGIVGGLPQVVDPAEAE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=442738 DSM104440_RS06865 WP_171165761.1 1331224..1332255(+) (recA) [Usitatibacter palustris strain Swamp67]
ATGGACGAAAACAAGTCGAAGGCGCTCTCCGCCGCGCTTTCGCAGATCGAGAAGCAGTTCGGCAAGGGCTCGATCATGAA
GATGGGCGATCGCGATGTGTCGCGTGATATTCAAGCGGTCTCCACCGGCTCGCTGGGCCTGGACATGGCGCTCGGCATCG
GCGGCCTGCCCCGCGGTCGCGTCTGCGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATC
GCCAACATCCAGAAGCTCGGCGGCACGGCGGCCTTCATCGATGCGGAACATGCGCTCGATCCGCAGTACGCGCAGCGCCT
CGGTGTCGATATCTCGGAGCTCCTGCTTTCGCAGCCGGACAACGGCGAACAGGCCCTCGAGATCGCAGACATGCTCGTGC
GCTCGGGCTCGGTCGATTGCGTCGTGGTCGATTCCGTCGCCGCGCTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GAGCCCCAGATGGGCCTGCAGGCGCGCCTCATGTCGCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGCGCTCCAACAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACCCGGAAACCACCACGGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGCATCGGCTCGATCAAGAAGGGCGAAGAGGTCATCGGCAAC
GAGACGCGCGTGAAGGTCGTGAAGAACAAGGTCGCGCCCCCGTTCCGCGTCGCCGATTTCGACATCCTCTACAACGAGGG
GATCTCCCGCGAAGGCGAGATCATCGAGATGGGCGTGATCCACCGCATCGTGGAAAAGTCCGGCGCCTGGTACGCCTACA
ACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGCGAGTTCCTGAAGGAAAACCCGGCCATCTCGCAGGAGATCGAG
CGGAAGATCCGCGAGGCCATCGGCATCGTGGGCGGGTTGCCGCAAGTCGTTGACCCCGCTGAAGCCGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

78.662

91.545

0.72
  recA Acinetobacter baumannii D1279779

70.725

100

0.711
  recA Acinetobacter baylyi ADP1

73.7

95.335

0.703
  recA Pseudomonas stutzeri DSM 10701

74.074

94.461

0.7
  recA Neisseria gonorrhoeae MS11

72.948

95.918

0.7
  recA Neisseria gonorrhoeae MS11

72.948

95.918

0.7
  recA Neisseria gonorrhoeae strain FA1090

72.948

95.918

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.56

95.335

0.682
  recA Vibrio cholerae strain A1552

71.56

95.335

0.682
  recA Glaesserella parasuis strain SC1401

71.692

94.752

0.679
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

95.044

0.636
  recA Helicobacter pylori 26695

65.35

95.918

0.627
  recA Helicobacter pylori strain NCTC11637

65.35

95.918

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.458

96.793

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

96.501

0.615
  recA Streptococcus mutans UA159

60.961

97.085

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

61.774

95.335

0.589
  recA Streptococcus pneumoniae R6

59.94

96.793

0.58
  recA Streptococcus pneumoniae Rx1

59.94

96.793

0.58
  recA Streptococcus pneumoniae D39

59.94

96.793

0.58
  recA Streptococcus pneumoniae TIGR4

59.94

96.793

0.58
  recA Streptococcus mitis NCTC 12261

59.639

96.793

0.577
  recA Streptococcus pyogenes NZ131

60

96.21

0.577
  recA Streptococcus mitis SK321

59.337

96.793

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.394

96.21

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

95.044

0.566