Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HIR79_RS17260 Genome accession   NZ_CP053032
Coordinates   3688094..3689155 (-) Length   353 a.a.
NCBI ID   WP_169959291.1    Uniprot ID   A0A6M4FYY9
Organism   Halomonas sp. PGE1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3683094..3694155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIR79_RS17240 (HIR79_17255) csrA 3683104..3683301 (-) 198 WP_119023335.1 carbon storage regulator CsrA -
  HIR79_RS17245 (HIR79_17260) - 3683498..3684748 (-) 1251 WP_169959288.1 aspartate kinase -
  HIR79_RS17250 (HIR79_17265) alaS 3684855..3687467 (-) 2613 WP_169959289.1 alanine--tRNA ligase -
  HIR79_RS17255 (HIR79_17270) - 3687602..3688090 (-) 489 WP_169959290.1 regulatory protein RecX -
  HIR79_RS17260 (HIR79_17275) recA 3688094..3689155 (-) 1062 WP_169959291.1 recombinase RecA Machinery gene
  HIR79_RS17265 (HIR79_17280) - 3689263..3689775 (-) 513 WP_169959292.1 CinA family protein -
  HIR79_RS17270 (HIR79_17285) mutS 3689882..3692464 (+) 2583 WP_169959293.1 DNA mismatch repair protein MutS -
  HIR79_RS17275 (HIR79_17290) fdxA 3692788..3693111 (+) 324 WP_102627034.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37751.07 Da        Isoelectric Point: 5.0197

>NTDB_id=442327 HIR79_RS17260 WP_169959291.1 3688094..3689155(-) (recA) [Halomonas sp. PGE1]
MAQDDNRSKALSAALSQIERQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPFGRVVEIFGPESSGKTTLTLSV
IAQAQKQGKVCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGHIKNANCLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVIDLGVQCSLVDKAGAWYSYQGNKIGQGKANAAQFLEDNPAIMEEI
ESQIRAQLLAAPARREEAEEPAAAEAGREDDLL

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=442327 HIR79_RS17260 WP_169959291.1 3688094..3689155(-) (recA) [Halomonas sp. PGE1]
ATGGCTCAGGATGACAACCGCTCCAAGGCGCTGAGCGCCGCGCTTTCCCAGATCGAGCGCCAGTTCGGCAAGGGCACCGT
GATGCGCCTCGGCGATGCCCCGCGGGTGGTCATGCCGTCGGTGTCCACCGGTTCCCTGGGGCTCGACATCGCACTGGGCA
TCGGCGGCCTGCCCTTCGGCCGCGTGGTGGAGATCTTCGGCCCGGAGTCCTCGGGCAAGACCACCCTGACCCTCTCGGTG
ATCGCCCAGGCCCAGAAGCAGGGCAAGGTGTGCGCCTTCATCGACGCCGAGCACGCCCTGGACCCGAGCTACGCCGAGAA
GCTCGGCGTCAACCTCGATGACCTGCTGGTTTCCCAGCCCGACACCGGCGAGCAGGCCCTCGAGATCTGCGACATGCTGG
TGCGTTCCGGCGGCGTCGACGTGATCATCATCGACTCGGTGGCCGCACTCACCCCGCGGGCCGAGATCGAGGGCGAGATG
GGTGACTCCCACGTCGGCCTGCAGGCGCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGCCACATCAAGAACGCCAA
CTGCCTGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGCGGCA
ACGCCCTGAAGTTCTACGCCAGCGTGCGCCTGGATATCCGTCGCACCGGCTCGGTGAAGCAGGGCGACGAGGTCACCGGC
AACGAGACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCTCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAA
GGGCATCTACCACGCCGGTGAGGTGATCGACCTGGGCGTGCAGTGCAGCCTGGTCGACAAGGCCGGCGCCTGGTACAGCT
ACCAGGGCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCCAGTTCCTCGAGGACAACCCGGCCATCATGGAGGAGATC
GAGAGCCAGATCCGCGCCCAGCTGCTCGCTGCTCCGGCCCGCAGGGAGGAAGCCGAGGAGCCCGCGGCGGCCGAGGCCGG
CCGCGAGGACGACCTGCTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4FYY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.515

93.484

0.762
  recA Acinetobacter baylyi ADP1

73.563

98.584

0.725
  recA Acinetobacter baumannii D1279779

73.099

96.884

0.708
  recA Vibrio cholerae strain A1552

69.298

96.884

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.298

96.884

0.671
  recA Glaesserella parasuis strain SC1401

71.037

92.918

0.66
  recA Neisseria gonorrhoeae MS11

72.136

91.501

0.66
  recA Neisseria gonorrhoeae MS11

72.136

91.501

0.66
  recA Neisseria gonorrhoeae strain FA1090

72.136

91.501

0.66
  recA Ralstonia pseudosolanacearum GMI1000

72.063

89.235

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

96.884

0.601
  recA Helicobacter pylori 26695

62.918

93.201

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.607

95.184

0.586
  recA Helicobacter pylori strain NCTC11637

62.31

93.201

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

63.125

90.652

0.572
  recA Streptococcus mutans UA159

59.021

92.635

0.547
  recA Streptococcus mitis NCTC 12261

58.896

92.351

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

58.896

92.351

0.544
  recA Streptococcus pyogenes NZ131

58.232

92.918

0.541
  recA Streptococcus mitis SK321

58.589

92.351

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

92.351

0.535
  recA Streptococcus pneumoniae D39

57.669

92.351

0.533
  recA Streptococcus pneumoniae R6

57.669

92.351

0.533
  recA Streptococcus pneumoniae TIGR4

57.669

92.351

0.533
  recA Streptococcus pneumoniae Rx1

57.669

92.351

0.533
  recA Lactococcus lactis subsp. cremoris KW2

56.79

91.785

0.521