Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GV829_RS11255 Genome accession   NZ_CP053015
Coordinates   2349591..2350664 (+) Length   357 a.a.
NCBI ID   WP_169946722.1    Uniprot ID   A0A6M4AY29
Organism   Sphingomonas lacunae strain CSW-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2344591..2355664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GV829_RS11235 (GV829_11240) - 2347386..2347808 (+) 423 WP_169946717.1 DUF1214 domain-containing protein -
  GV829_RS11240 (GV829_11245) - 2347805..2348329 (+) 525 WP_169946718.1 DUF1254 domain-containing protein -
  GV829_RS11250 (GV829_11255) - 2348662..2349084 (+) 423 WP_169946720.1 hypothetical protein -
  GV829_RS11255 (GV829_11260) recA 2349591..2350664 (+) 1074 WP_169946722.1 recombinase RecA Machinery gene
  GV829_RS11260 (GV829_11265) - 2350807..2351436 (+) 630 WP_169946724.1 glutathione S-transferase -
  GV829_RS11265 (GV829_11270) alaS 2351553..2354204 (+) 2652 WP_169946726.1 alanine--tRNA ligase -
  GV829_RS11270 (GV829_11275) - 2354204..2354596 (+) 393 WP_169946728.1 hypothetical protein -
  GV829_RS11280 (GV829_11285) yajC 2355030..2355356 (+) 327 WP_169948269.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38363.95 Da        Isoelectric Point: 5.3603

>NTDB_id=442131 GV829_RS11255 WP_169946722.1 2349591..2350664(+) (recA) [Sphingomonas lacunae strain CSW-10]
MAAQLKVIDSTMANSPERQRALEAALAQIDRAFGKGSAMRLGSKEAMEVEAISTGSLGLDIALGIGGLPRGRVIEVYGPE
SSGKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKVGVNIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAA
LVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCIVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRT
GQIKDRDDIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDIGVKAGLVEKSGAWFSYDSVRIGQGRENAKQF
LRENPELREKLEKAIRGKTEEVADAMMVGPSADDDVE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=442131 GV829_RS11255 WP_169946722.1 2349591..2350664(+) (recA) [Sphingomonas lacunae strain CSW-10]
ATGGCAGCACAACTCAAGGTGATTGACAGCACGATGGCTAATTCCCCGGAACGGCAGCGCGCACTCGAAGCAGCACTGGC
CCAGATTGATCGCGCATTCGGCAAAGGTTCGGCCATGCGGCTGGGCAGCAAGGAAGCGATGGAGGTGGAGGCTATCTCTA
CCGGTTCGCTTGGTCTCGACATCGCTCTGGGCATTGGCGGCCTGCCGCGGGGCAGGGTGATCGAAGTCTATGGTCCGGAA
AGCTCGGGCAAGACCACATTGGCCCTGCATGTGATTGCTGAAGCACAGAAAGCAGGCGGCACGGCGGCCTTTGTCGATGC
CGAACATGCGCTGGATCCTGTCTATGCCAAGAAGGTGGGCGTCAACATCGACGAGCTGATTGTCTCGCAGCCGGATACAG
GCGAGCAGGCGCTGGAGATTGTCGACACGCTGGTGCGGTCGAACGCGATCGACGTGCTCGTTGTTGATTCGGTGGCTGCA
TTGGTTCCGCGCGCCGAAATCGAGGGAGAGATGGGCGACAGCCATGTCGGCCTTCAGGCCCGGCTGATGTCACAATCCTT
GCGCAAGCTGACCGGTTCGATCAGCCGCTCGCGCTGCATTGTCATCTTCATCAACCAGCTGCGCATGAAGATTGGCGTGA
TGTACGGCAATCCGGAGACGACGACGGGCGGCAATGCGCTGAAATTCTATGCCAGCGTCCGGCTCGATATCCGTCGCACC
GGACAGATCAAGGATCGTGACGATATTGTTGGCAACGCGACCCGGGTAAAGGTGGTCAAGAACAAGGTTGCCCCGCCTTT
CAAGCAGGTTGAATTCGACATCATGTATGGCGAGGGCATCTCCAAGATCGGCGAAATCCTCGATATTGGTGTCAAGGCTG
GCTTGGTGGAGAAATCGGGCGCCTGGTTCTCCTACGACTCGGTCCGCATTGGGCAGGGCCGTGAGAATGCCAAGCAGTTC
CTCAGGGAGAATCCGGAGCTGCGCGAAAAGCTGGAAAAGGCGATCCGTGGCAAGACCGAAGAGGTTGCCGATGCGATGAT
GGTCGGCCCCAGCGCGGATGATGATGTGGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4AY29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.249

94.398

0.644
  recA Vibrio cholerae strain A1552

66.667

95.798

0.639
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

95.798

0.639
  recA Glaesserella parasuis strain SC1401

65.689

95.518

0.627
  recA Neisseria gonorrhoeae MS11

67.492

90.476

0.611
  recA Neisseria gonorrhoeae MS11

67.492

90.476

0.611
  recA Neisseria gonorrhoeae strain FA1090

67.492

90.476

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

67.5

89.636

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.343

95.518

0.605
  recA Ralstonia pseudosolanacearum GMI1000

69.481

86.275

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.393

94.118

0.597
  recA Acinetobacter baumannii D1279779

66.771

89.356

0.597
  recA Acinetobacter baylyi ADP1

66.458

89.356

0.594
  recA Helicobacter pylori strain NCTC11637

62.687

93.838

0.588
  recA Helicobacter pylori 26695

62.388

93.838

0.585
  recA Streptococcus pyogenes NZ131

60.058

96.078

0.577
  recA Streptococcus pneumoniae TIGR4

62.577

91.317

0.571
  recA Streptococcus pneumoniae Rx1

62.577

91.317

0.571
  recA Streptococcus pneumoniae D39

62.577

91.317

0.571
  recA Streptococcus pneumoniae R6

62.577

91.317

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

63.438

89.636

0.569
  recA Streptococcus mitis NCTC 12261

62.654

90.756

0.569
  recA Streptococcus mitis SK321

62.654

90.756

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.94

92.997

0.557
  recA Streptococcus mutans UA159

60.802

90.756

0.552
  recA Lactococcus lactis subsp. cremoris KW2

58.735

92.997

0.546