Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HJ586_RS00895 Genome accession   NZ_CP053014
Coordinates   203156..204238 (+) Length   360 a.a.
NCBI ID   WP_038916680.1    Uniprot ID   -
Organism   Dickeya zeae strain MS_2018     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 198156..209238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJ586_RS00875 (HJ586_00875) - 198327..198956 (+) 630 WP_236305953.1 LysE family translocator -
  HJ586_RS00880 (HJ586_00880) cybB 199371..199904 (+) 534 WP_019845290.1 cytochrome b561 -
  HJ586_RS00885 (HJ586_00885) - 199959..200468 (-) 510 WP_023640539.1 SRPBCC family protein -
  HJ586_RS00890 (HJ586_00890) pncC 202556..203044 (+) 489 WP_236305954.1 nicotinamide-nucleotide amidase -
  HJ586_RS00895 (HJ586_00895) recA 203156..204238 (+) 1083 WP_038916680.1 recombinase RecA Machinery gene
  HJ586_RS00900 (HJ586_00900) recX 204282..204800 (+) 519 WP_236305955.1 recombination regulator RecX -
  HJ586_RS00905 (HJ586_00905) alaS 204937..207564 (+) 2628 WP_236305956.1 alanine--tRNA ligase -
  HJ586_RS00910 (HJ586_00910) csrA 207888..208073 (+) 186 WP_005972168.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38592.08 Da        Isoelectric Point: 4.7599

>NTDB_id=442107 HJ586_RS00895 WP_038916680.1 203156..204238(+) (recA) [Dickeya zeae strain MS_2018]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTFGELVDLGVKFKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAISAEL
DKKLRELLLHKDNEVVSGGVSSSESAEYNEEAAGELNDDF

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=442107 HJ586_RS00895 WP_038916680.1 203156..204238(+) (recA) [Dickeya zeae strain MS_2018]
ATGGCTATTGATGAGAACAAACAAAAGGCACTGGCGGCAGCGCTGGGTCAGATCGAAAAACAATTCGGTAAAGGTTCTAT
CATGCGTTTGGGCGAGGATCGCTCAATGGATGTTGAAACGATCTCCACAGGTTCCTTGTCGCTTGATATCGCACTGGGTG
TTGGTGGTTTGCCAATGGGCCGTATTGTTGAGATTTACGGTCCGGAGTCCTCTGGTAAAACGACCCTGACACTGCAGGTG
ATTGCCGCCGCGCAGCGTGAAGGTAAAACTTGTGCGTTCATCGATGCCGAACATGCGCTGGATCCGATCTACGCTAAAAA
GTTGGGTGTTGATATCGATAATCTGCTGTGTTCCCAGCCGGATACCGGCGAGCAGGCATTGGAGATTTGTGATGCGCTGG
CGCGTTCTGGTGCCGTTGATGTCATTATCGTGGACTCCGTTGCTGCGCTGACGCCGAAAGCAGAAATTGAAGGGGAAATC
GGTGATTCCCATATGGGGCTGGCGGCTCGTATGATGAGTCAGGCTATGCGTAAGCTGGCCGGTAACCTGAAACAATCCAA
TACACTGCTGATCTTTATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCAGAAACCACGACTGGTGGTA
ACGCGCTGAAATTCTATGCTTCTGTCCGTCTGGATATTCGCCGTATCGGCTCTATCAAAGAAGGTGAAGAAGTTGTCGGG
AGTGAAACCCGCGTTAAAGTTGTGAAGAACAAGGTTGCTGCACCCTTCAAGCAGGCTGAATTCCAGATTCTGTATGGCGA
AGGGATTAACACCTTCGGAGAGTTGGTTGATCTTGGCGTGAAGTTCAAGCTGATTGAAAAAGCCGGTGCCTGGTACAGCT
ACAATGGTGACAAAATTGGCCAGGGTAAGGCTAACGCCTGTAATTTCCTGAAAGAGAATCCGGCTATCTCTGCCGAACTC
GACAAGAAGCTGCGCGAATTGTTGCTGCATAAAGATAACGAAGTGGTATCGGGTGGCGTCAGCAGTAGTGAAAGTGCCGA
GTACAATGAGGAAGCGGCTGGCGAACTGAACGACGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.133

96.389

0.792
  recA Vibrio cholerae strain A1552

82.133

96.389

0.792
  recA Pseudomonas stutzeri DSM 10701

75.229

90.833

0.683
  recA Acinetobacter baylyi ADP1

73.556

91.389

0.672
  recA Glaesserella parasuis strain SC1401

68.376

97.5

0.667
  recA Acinetobacter baumannii D1279779

73.394

90.833

0.667
  recA Neisseria gonorrhoeae MS11

70.552

90.556

0.639
  recA Neisseria gonorrhoeae MS11

70.552

90.556

0.639
  recA Neisseria gonorrhoeae strain FA1090

70.552

90.556

0.639
  recA Ralstonia pseudosolanacearum GMI1000

71.061

86.389

0.614
  recA Streptococcus pneumoniae D39

58.791

100

0.594
  recA Streptococcus pneumoniae TIGR4

58.791

100

0.594
  recA Streptococcus pneumoniae Rx1

58.791

100

0.594
  recA Streptococcus pneumoniae R6

58.791

100

0.594
  recA Streptococcus mutans UA159

59.04

98.333

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.885

96.944

0.581
  recA Helicobacter pylori 26695

62.691

90.833

0.569
  recA Helicobacter pylori strain NCTC11637

62.385

90.833

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

61.631

91.944

0.567
  recA Streptococcus mitis NCTC 12261

62.539

89.722

0.561
  recA Streptococcus mitis SK321

62.539

89.722

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

93.056

0.558
  recA Lactococcus lactis subsp. cremoris KW2

61.92

89.722

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

90.278

0.556
  recA Streptococcus pyogenes NZ131

61.538

90.278

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

90.556

0.536