Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HHK01_RS08275 Genome accession   NZ_CP052135
Coordinates   1692727..1693773 (-) Length   348 a.a.
NCBI ID   WP_170007343.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1687727..1698773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS08265 - 1688668..1689465 (-) 798 WP_170007341.1 TIGR00282 family metallophosphoesterase -
  HHK01_RS08270 rny 1690633..1692195 (-) 1563 WP_407646953.1 ribonuclease Y -
  HHK01_RS08275 recA 1692727..1693773 (-) 1047 WP_170007343.1 recombinase RecA Machinery gene
  HHK01_RS08280 cinA 1694064..1695305 (-) 1242 WP_170007344.1 competence/damage-inducible protein A Machinery gene
  HHK01_RS08285 pgsA 1695326..1695904 (-) 579 WP_170007345.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HHK01_RS08290 - 1695973..1696917 (-) 945 WP_407646899.1 helix-turn-helix domain-containing protein -
  HHK01_RS08295 - 1696933..1697718 (-) 786 WP_228027521.1 DUF3388 domain-containing protein -
  HHK01_RS08300 - 1697927..1698193 (-) 267 WP_170007348.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37905.30 Da        Isoelectric Point: 5.2121

>NTDB_id=441440 HHK01_RS08275 WP_170007343.1 1692727..1693773(-) (recA) [Bacillus fonticola strain CS13]
MSDRQKALDMALKQIEKQFGKGSIMKLGEQTDRKVSTMPSGSLALDVALGIGGYPRGRIVEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVIIDSVAALVPKAEIEGEMGDT
HVGLQARLMSQALRKLSGAISKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT
RVKVVKNKVAPPFRVAEVDIMYGEGISKEGELIDMASELDIIQKSGAWYSYNGERLGQGRENAKLFLKENKNILSEVQTA
VRDHYGLDEKNLTREEEMQDPLELDELS

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=441440 HHK01_RS08275 WP_170007343.1 1692727..1693773(-) (recA) [Bacillus fonticola strain CS13]
GTGAGTGATCGTCAAAAAGCGCTCGATATGGCGTTAAAACAAATAGAAAAGCAGTTTGGTAAAGGGTCTATTATGAAATT
AGGAGAGCAGACCGATCGGAAAGTTTCTACGATGCCGAGTGGCTCCTTAGCTTTGGATGTGGCGCTAGGAATAGGGGGCT
ATCCGCGCGGACGAATCGTGGAAGTGTACGGACCGGAGAGCTCTGGTAAAACGACCGTTGCATTGCATGCCATCGCGGAA
GTACAAGCAAAGGGTGGTCAAGCGGCGTTTATTGATGCTGAGCACGCCTTGGATCCTGTTTACGCGCAAAAACTAGGGGT
CAACATCGACGAGCTTCTCCTTTCCCAGCCAGATACGGGGGAGCAAGCGTTGGAAATCGCGGAAGCATTAGTTCGAAGTG
GAGCGGTTGACATCGTAATCATCGACTCTGTTGCCGCTCTTGTCCCGAAAGCGGAAATTGAAGGGGAGATGGGTGACACG
CACGTCGGACTACAGGCGAGACTGATGTCCCAAGCGCTTAGAAAGTTATCTGGTGCGATTAGTAAATCGAAAACGATCGC
TATTTTCATTAACCAGATTCGTGAAAAAGTCGGCGTGATGTTTGGGAATCCTGAAACGACTCCTGGTGGACGTGCGCTTA
AATTCTACTCCTCTGTACGTTTGGAAGTACGAAGAGCGGAACAATTGAAGCAAGGGAACGACATCGTAGGAAACAAAACA
CGAGTGAAAGTTGTGAAGAATAAAGTTGCGCCACCATTCCGCGTGGCAGAAGTTGATATTATGTACGGCGAAGGCATCTC
AAAAGAAGGCGAATTAATCGATATGGCATCTGAATTAGATATTATTCAAAAAAGCGGTGCTTGGTACTCGTATAACGGGG
AACGACTTGGTCAAGGACGCGAGAACGCAAAACTGTTCTTAAAGGAAAATAAAAACATTCTTTCCGAAGTTCAGACCGCT
GTTCGGGACCATTATGGACTTGACGAGAAGAACCTTACAAGAGAAGAAGAGATGCAAGACCCGCTAGAGCTTGACGAGCT
ATCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.11

94.253

0.83
  recA Latilactobacillus sakei subsp. sakei 23K

73.824

97.701

0.721
  recA Streptococcus mutans UA159

68.103

100

0.681
  recA Streptococcus pneumoniae Rx1

69.697

94.828

0.661
  recA Streptococcus pneumoniae R6

69.697

94.828

0.661
  recA Streptococcus pneumoniae D39

69.697

94.828

0.661
  recA Streptococcus pneumoniae TIGR4

69.697

94.828

0.661
  recA Streptococcus mitis NCTC 12261

69.697

94.828

0.661
  recA Streptococcus mitis SK321

69.394

94.828

0.658
  recA Streptococcus pyogenes NZ131

69.512

94.253

0.655
  recA Lactococcus lactis subsp. cremoris KW2

67.879

94.828

0.644
  recA Neisseria gonorrhoeae strain FA1090

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Neisseria gonorrhoeae MS11

65.749

93.966

0.618
  recA Ralstonia pseudosolanacearum GMI1000

63.501

96.839

0.615
  recA Vibrio cholerae strain A1552

64.486

92.241

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

92.241

0.595
  recA Helicobacter pylori strain NCTC11637

60.526

98.276

0.595
  recA Helicobacter pylori 26695

60.526

98.276

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.691

93.966

0.589
  recA Glaesserella parasuis strain SC1401

64.062

91.954

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

93.966

0.583
  recA Acinetobacter baylyi ADP1

63.043

92.529

0.583
  recA Acinetobacter baumannii D1279779

62.733

92.529

0.58
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

91.954

0.56