Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HG549_RS06170 | Genome accession | NZ_CP051857 |
| Coordinates | 1345191..1346258 (+) | Length | 355 a.a. |
| NCBI ID | WP_170028690.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. SK | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1317768..1350450 | 1345191..1346258 | within | 0 |
Gene organization within MGE regions
Location: 1317768..1350450
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG549_RS06020 (HG549_06025) | - | 1317768..1318664 (-) | 897 | WP_170028664.1 | LysR substrate-binding domain-containing protein | - |
| HG549_RS06025 (HG549_06030) | - | 1318772..1319884 (+) | 1113 | WP_016712915.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| HG549_RS06030 (HG549_06035) | fghA | 1319893..1320747 (+) | 855 | WP_170028665.1 | S-formylglutathione hydrolase | - |
| HG549_RS06035 (HG549_06040) | ispF | 1320835..1321308 (+) | 474 | WP_170028666.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| HG549_RS06040 (HG549_06045) | truD | 1321305..1322363 (+) | 1059 | WP_170028667.1 | tRNA pseudouridine(13) synthase TruD | - |
| HG549_RS06045 (HG549_06050) | surE | 1322351..1323100 (+) | 750 | WP_170028668.1 | 5'/3'-nucleotidase SurE | - |
| HG549_RS06050 (HG549_06055) | - | 1323136..1323774 (+) | 639 | WP_170034070.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| HG549_RS06055 (HG549_06060) | - | 1323994..1324851 (+) | 858 | WP_170034072.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| HG549_RS06060 (HG549_06065) | rpoS | 1324960..1325967 (+) | 1008 | WP_170028669.1 | RNA polymerase sigma factor RpoS | - |
| HG549_RS06065 (HG549_06070) | fdxA | 1326484..1326807 (-) | 324 | WP_170028670.1 | ferredoxin FdxA | - |
| HG549_RS06070 (HG549_06075) | mutS | 1326948..1329521 (-) | 2574 | WP_170028671.1 | DNA mismatch repair protein MutS | - |
| HG549_RS06075 (HG549_06080) | - | 1329661..1330407 (+) | 747 | WP_170028672.1 | S24 family peptidase | - |
| HG549_RS06080 (HG549_06085) | - | 1330883..1331221 (+) | 339 | WP_170028673.1 | phage holin family protein | - |
| HG549_RS06085 (HG549_06090) | - | 1331234..1331731 (+) | 498 | WP_170028674.1 | hypothetical protein | - |
| HG549_RS06090 (HG549_06095) | - | 1331728..1332288 (+) | 561 | WP_170028675.1 | phage baseplate assembly protein V | - |
| HG549_RS06095 (HG549_06100) | - | 1332361..1332687 (+) | 327 | WP_170028676.1 | GPW/gp25 family protein | - |
| HG549_RS06100 (HG549_06105) | - | 1332684..1333565 (+) | 882 | WP_170028677.1 | baseplate J/gp47 family protein | - |
| HG549_RS06105 (HG549_06110) | - | 1333567..1334175 (+) | 609 | WP_170028678.1 | phage tail protein I | - |
| HG549_RS25925 | - | 1334168..1335238 (+) | 1071 | Protein_1186 | phage tail protein | - |
| HG549_RS26210 | - | 1336094..1336699 (+) | 606 | WP_372241562.1 | glycine-rich domain-containing protein | - |
| HG549_RS06115 (HG549_06120) | - | 1336705..1337103 (+) | 399 | WP_170028680.1 | phage tail assembly chaperone | - |
| HG549_RS06120 (HG549_06125) | - | 1337186..1338352 (+) | 1167 | WP_170028681.1 | phage tail sheath family protein | - |
| HG549_RS06125 (HG549_06130) | - | 1338366..1338875 (+) | 510 | WP_170028682.1 | phage major tail tube protein | - |
| HG549_RS06130 (HG549_06135) | - | 1338886..1339188 (+) | 303 | WP_170028683.1 | phage tail assembly protein | - |
| HG549_RS06135 (HG549_06140) | - | 1339314..1341380 (+) | 2067 | WP_170028684.1 | hypothetical protein | - |
| HG549_RS06140 (HG549_06145) | - | 1341390..1342235 (+) | 846 | WP_170028685.1 | phage tail protein | - |
| HG549_RS06145 (HG549_06150) | - | 1342210..1342416 (+) | 207 | WP_170028686.1 | tail protein X | - |
| HG549_RS06150 (HG549_06155) | - | 1342421..1343455 (+) | 1035 | WP_170028687.1 | phage late control D family protein | - |
| HG549_RS06155 (HG549_06160) | - | 1343483..1344031 (+) | 549 | WP_170028688.1 | glycoside hydrolase family 19 protein | - |
| HG549_RS06160 (HG549_06165) | - | 1344025..1344513 (+) | 489 | WP_256666070.1 | lysis system i-spanin subunit Rz | - |
| HG549_RS06165 (HG549_06170) | - | 1344605..1345087 (+) | 483 | WP_170028689.1 | CinA family protein | - |
| HG549_RS06170 (HG549_06175) | recA | 1345191..1346258 (+) | 1068 | WP_170028690.1 | recombinase RecA | Machinery gene |
| HG549_RS06175 (HG549_06180) | recX | 1346277..1346747 (+) | 471 | WP_170028691.1 | recombination regulator RecX | - |
| HG549_RS06180 (HG549_06185) | - | 1346868..1347986 (-) | 1119 | WP_170028692.1 | LOG family protein | - |
| HG549_RS06185 (HG549_06190) | - | 1348147..1348356 (+) | 210 | WP_170028693.1 | hypothetical protein | - |
| HG549_RS06190 (HG549_06195) | - | 1348373..1348792 (-) | 420 | WP_170028694.1 | quorum-sensing-regulated virulence factor family protein | - |
| HG549_RS06195 (HG549_06200) | - | 1349012..1349722 (+) | 711 | WP_170028695.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| HG549_RS06200 (HG549_06205) | erdR | 1349800..1350450 (+) | 651 | WP_016715442.1 | response regulator transcription factor ErdR | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37485.86 Da Isoelectric Point: 5.3117
>NTDB_id=440952 HG549_RS06170 WP_170028690.1 1345191..1346258(+) (recA) [Pseudomonas sp. SK]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLTAGAVAAAGKAAAAEADADDMADADAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLTAGAVAAAGKAAAAEADADDMADADAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=440952 HG549_RS06170 WP_170028690.1 1345191..1346258(+) (recA) [Pseudomonas sp. SK]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGCCAATTCGGCAAGGGTGCGGTCATGCG
CATGGGCGACCATGAGCGCCAGGCGATCCCTGCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCCCTCGGTATCGGCG
GCCTGCCGAAAGGCCGTATCGTCGAAATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAGAACGGCGCCACCTGTGCCTTCGTCGACGCCGAACACGCGCTCGACCCGGAATATGCCGGCAAGCTGGG
TGTCAATGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCACGTGGGTCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGTCGTACCGGTGCAGTCAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTGTCGCCACCGTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAATGGCGAGATCATCGACCTGGGTGTGGCCCAGGGGCTGGTCGAGAAGTCCGGTGCCTGGTATGCCTACCAGG
GCAACAAAATCGGTCAAGGCAAGGCAAATGCTGCCAAGTACCTGGCTGAGAACCCGGCCATCGGCGCCGAGATCGAGAAG
CAGATCCGCGAGAAGCTGCTGACCGCTGGTGCTGTTGCGGCCGCCGGGAAGGCTGCTGCGGCCGAAGCTGATGCCGATGA
CATGGCCGACGCTGACGCCGGTTATTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGCCAATTCGGCAAGGGTGCGGTCATGCG
CATGGGCGACCATGAGCGCCAGGCGATCCCTGCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCCCTCGGTATCGGCG
GCCTGCCGAAAGGCCGTATCGTCGAAATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAGAACGGCGCCACCTGTGCCTTCGTCGACGCCGAACACGCGCTCGACCCGGAATATGCCGGCAAGCTGGG
TGTCAATGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCACGTGGGTCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGTCGTACCGGTGCAGTCAAGGAAGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTGTCGCCACCGTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAATGGCGAGATCATCGACCTGGGTGTGGCCCAGGGGCTGGTCGAGAAGTCCGGTGCCTGGTATGCCTACCAGG
GCAACAAAATCGGTCAAGGCAAGGCAAATGCTGCCAAGTACCTGGCTGAGAACCCGGCCATCGGCGCCGAGATCGAGAAG
CAGATCCGCGAGAAGCTGCTGACCGCTGGTGCTGTTGCGGCCGCCGGGAAGGCTGCTGCGGCCGAAGCTGATGCCGATGA
CATGGCCGACGCTGACGCCGGTTATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.