Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HH195_RS06660 Genome accession   NZ_CP051754
Coordinates   1486158..1487189 (-) Length   343 a.a.
NCBI ID   WP_055257141.1    Uniprot ID   -
Organism   Sarcina sp. JB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1481158..1492189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH195_RS06640 (HH195_06640) - 1482041..1482301 (-) 261 WP_055257137.1 HPr family phosphocarrier protein -
  HH195_RS06645 (HH195_06645) - 1482452..1483648 (-) 1197 WP_196370364.1 pyridoxal phosphate-dependent aminotransferase -
  HH195_RS06650 (HH195_06650) - 1483845..1484105 (-) 261 WP_055257139.1 stage V sporulation protein S -
  HH195_RS06655 (HH195_06655) rny 1484266..1485810 (-) 1545 WP_055257140.1 ribonuclease Y -
  HH195_RS06660 (HH195_06660) recA 1486158..1487189 (-) 1032 WP_055257141.1 recombinase RecA Machinery gene
  HH195_RS06665 (HH195_06665) pgsA 1487330..1487908 (-) 579 WP_055257142.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HH195_RS06670 (HH195_06670) rimO 1487892..1489226 (-) 1335 WP_196370366.1 30S ribosomal protein S12 methylthiotransferase RimO -
  HH195_RS06675 (HH195_06675) - 1489295..1491541 (-) 2247 WP_196371915.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37127.70 Da        Isoelectric Point: 5.5562

>NTDB_id=440861 HH195_RS06660 WP_055257141.1 1486158..1487189(-) (recA) [Sarcina sp. JB2]
MAKIDENKLKAIEMAMGQIEKQFGKGSVMKLGEDATANIDAVSTGCLDLDIALGIGGVPRGRIIEIYGPESSGKTTIALH
VVAEAQKLGGAAAYIDAEHALDPGYASKLGVDIDNLVVSQPDTGEQGLEIAEALVRSGAIDVLVVDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKLAGSINQTKCVAIFINQLREKVGIMFGNPEVTPGGRALKFYASVRMDIRRIDSIKQGDAIM
GNRTRVKVIKNKVAPPFRQAEFDIMYNEGISKTGNLVDVGVKEEIIQKSGAWFSYGDIRLGQGRENAKQYLKDNEEIALE
IERKIREKHNLPMLEVAVSKEEK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=440861 HH195_RS06660 WP_055257141.1 1486158..1487189(-) (recA) [Sarcina sp. JB2]
ATGGCTAAAATAGATGAAAATAAATTAAAAGCTATTGAGATGGCAATGGGTCAAATCGAAAAACAATTTGGAAAAGGTTC
AGTTATGAAACTTGGGGAAGATGCTACAGCAAATATAGATGCAGTATCTACCGGGTGTTTAGATTTAGATATAGCTCTTG
GAATCGGAGGAGTTCCAAGGGGAAGAATAATAGAAATTTATGGACCAGAAAGTTCTGGTAAAACAACTATTGCATTGCAT
GTTGTTGCAGAAGCTCAGAAATTAGGTGGAGCAGCAGCTTATATTGATGCAGAACATGCATTAGATCCAGGATATGCATC
AAAGCTTGGTGTAGATATAGATAATTTAGTAGTATCACAGCCAGATACTGGAGAACAAGGTTTAGAAATTGCAGAAGCTT
TAGTTAGATCAGGGGCTATAGATGTTTTAGTTGTAGATTCAGTGGCGGCTCTTGTTCCAAGAGCTGAAATAGAAGGTGAG
ATGGGAGACTCTCATGTAGGTCTTCAGGCAAGACTTATGTCGCAAGCTCTTAGAAAATTAGCAGGTAGTATAAATCAAAC
TAAATGTGTTGCAATATTTATAAATCAGTTAAGAGAAAAAGTTGGAATAATGTTTGGAAACCCTGAAGTTACGCCAGGTG
GAAGAGCTTTAAAATTTTATGCATCAGTTAGAATGGATATTAGAAGAATAGATTCAATAAAGCAAGGCGATGCTATAATG
GGAAATAGAACTAGGGTTAAAGTAATAAAAAATAAAGTTGCACCTCCGTTTAGACAAGCTGAATTTGATATAATGTATAA
TGAAGGAATATCTAAGACAGGAAATTTAGTAGATGTAGGTGTAAAAGAAGAAATAATTCAAAAGAGTGGAGCTTGGTTCT
CTTATGGAGATATAAGACTTGGTCAAGGTAGAGAAAATGCAAAGCAGTACTTAAAAGACAATGAAGAGATAGCTTTAGAA
ATTGAAAGAAAAATAAGAGAAAAGCATAATCTTCCAATGTTAGAAGTAGCAGTTTCTAAAGAAGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.717

93.586

0.662
  recA Latilactobacillus sakei subsp. sakei 23K

64.74

100

0.653
  recA Streptococcus pyogenes NZ131

65.455

96.21

0.63
  recA Streptococcus mitis NCTC 12261

65.951

95.044

0.627
  recA Streptococcus mitis SK321

65.644

95.044

0.624
  recA Streptococcus mutans UA159

63.964

97.085

0.621
  recA Streptococcus pneumoniae Rx1

65.337

95.044

0.621
  recA Streptococcus pneumoniae TIGR4

65.337

95.044

0.621
  recA Streptococcus pneumoniae R6

65.337

95.044

0.621
  recA Streptococcus pneumoniae D39

65.337

95.044

0.621
  recA Acinetobacter baumannii D1279779

65.231

94.752

0.618
  recA Helicobacter pylori 26695

64.923

94.752

0.615
  recA Helicobacter pylori strain NCTC11637

64.923

94.752

0.615
  recA Neisseria gonorrhoeae strain FA1090

63.444

96.501

0.612
  recA Neisseria gonorrhoeae MS11

63.444

96.501

0.612
  recA Neisseria gonorrhoeae MS11

63.444

96.501

0.612
  recA Acinetobacter baylyi ADP1

64.615

94.752

0.612
  recA Ralstonia pseudosolanacearum GMI1000

64.506

94.461

0.609
  recA Lactococcus lactis subsp. cremoris KW2

64.11

95.044

0.609
  recA Pseudomonas stutzeri DSM 10701

64

94.752

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.424

96.21

0.601
  recA Glaesserella parasuis strain SC1401

63.863

93.586

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.963

94.461

0.595
  recA Vibrio cholerae strain A1552

62.963

94.461

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

94.461

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.568

92.42

0.56