Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HH212_RS10675 Genome accession   NZ_CP051685
Coordinates   2467972..2469054 (+) Length   360 a.a.
NCBI ID   WP_170202461.1    Uniprot ID   A0A7Z2ZSL1
Organism   Massilia forsythiae strain GN2-R2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2462972..2474054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH212_RS10655 (HH212_10655) - 2462986..2465061 (-) 2076 WP_170202458.1 sodium:solute symporter family protein -
  HH212_RS10660 (HH212_10660) - 2465058..2465393 (-) 336 WP_170202459.1 DUF4212 domain-containing protein -
  HH212_RS10665 (HH212_10665) - 2465383..2466882 (-) 1500 WP_229217661.1 sensor histidine kinase -
  HH212_RS10670 (HH212_10670) - 2466921..2467631 (-) 711 WP_170202460.1 response regulator transcription factor -
  HH212_RS10675 (HH212_10675) recA 2467972..2469054 (+) 1083 WP_170202461.1 recombinase RecA Machinery gene
  HH212_RS10680 (HH212_10680) recX 2469075..2469530 (+) 456 WP_170202462.1 recombination regulator RecX -
  HH212_RS10685 (HH212_10685) - 2469858..2470415 (+) 558 WP_170205373.1 DUF2889 domain-containing protein -
  HH212_RS10690 (HH212_10690) sucC 2470495..2471664 (+) 1170 WP_170202463.1 ADP-forming succinate--CoA ligase subunit beta -
  HH212_RS10695 (HH212_10695) sucD 2471682..2472563 (+) 882 WP_170202464.1 succinate--CoA ligase subunit alpha -
  HH212_RS10700 (HH212_10700) - 2472879..2473343 (+) 465 WP_170202465.1 pilin -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38220.72 Da        Isoelectric Point: 5.3499

>NTDB_id=440461 HH212_RS10675 WP_170202461.1 2467972..2469054(+) (recA) [Massilia forsythiae strain GN2-R2]
MDDKKTAVNAAEKGKALAAALAQIEKQFGKGSVMRMDANTPVEEVQTVSTGSLGLDIALGVGGLPRGRIVEIYGPESSGK
TTLTLQTIAQMQKLGGTCAFIDAEHALDVGYAQKLGIKLDELLISQPDTGEQALEITDALVRSGSVDLVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTASINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEIIDLGVDNKLVEKAGSWYSYGGERIGQGKDNARQFLKDR
PALAREIENKVRAALGVRELPPVAAGAEAAAPVAATAVEE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=440461 HH212_RS10675 WP_170202461.1 2467972..2469054(+) (recA) [Massilia forsythiae strain GN2-R2]
ATGGACGATAAGAAAACCGCAGTAAATGCAGCCGAAAAAGGCAAGGCGCTGGCAGCAGCCCTCGCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGGTCATGCGCATGGATGCCAACACGCCGGTCGAGGAAGTGCAAACCGTGTCCACCGGCTCGCTGG
GCCTGGACATCGCGCTCGGCGTCGGCGGCCTGCCGCGCGGCCGTATCGTCGAAATCTACGGTCCGGAGTCGTCGGGCAAG
ACCACGCTGACCCTGCAGACCATCGCCCAGATGCAAAAGCTGGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGCGCT
CGACGTCGGCTATGCGCAAAAGCTGGGCATCAAGCTGGACGAGCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCGC
TGGAAATCACCGACGCGCTGGTGCGCTCGGGCAGCGTCGACCTGGTGGTCATCGACTCGGTGGCGGCGCTGACCCCGCGC
GCCGAGATCGAAGGCGACATGGGCGACTCGCTGCCGGGCCTGCAGGCCCGACTGATGTCGCAGGCGCTGCGCAAGCTGAC
CGCGTCGATCAACCGCACCAACACGCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCC
CGGAAACCACGACCGGCGGTAACGCGCTGAAGTTCTACGCCTCCGTGCGCATGGACATCCGCCGTACCGGTTCGATCAAG
TCGGGCGACGAGGTGATCGGTAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCGTTCAAGGAAGCCCA
CTTCGACATCCTGTATGGCGAAGGCACGTCGCGCGAAGGCGAGATCATCGACCTGGGCGTGGACAACAAGCTGGTCGAGA
AGGCGGGTTCCTGGTATAGCTATGGCGGCGAACGTATCGGCCAGGGCAAGGACAATGCCCGCCAGTTCTTGAAGGACCGC
CCGGCCCTGGCGCGCGAGATCGAGAACAAGGTCCGTGCCGCCCTCGGCGTGCGCGAACTGCCGCCGGTCGCGGCCGGTGC
CGAGGCTGCCGCCCCGGTGGCCGCCACGGCCGTCGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.827

96.389

0.769
  recA Neisseria gonorrhoeae MS11

72.699

90.556

0.658
  recA Neisseria gonorrhoeae strain FA1090

72.699

90.556

0.658
  recA Neisseria gonorrhoeae MS11

72.699

90.556

0.658
  recA Acinetobacter baylyi ADP1

68.103

96.667

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.622

96.944

0.656
  recA Vibrio cholerae strain A1552

67.622

96.944

0.656
  recA Acinetobacter baumannii D1279779

71.207

89.722

0.639
  recA Pseudomonas stutzeri DSM 10701

70.898

89.722

0.636
  recA Glaesserella parasuis strain SC1401

69.817

91.111

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.261

91.389

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

90.833

0.581
  recA Helicobacter pylori 26695

63.222

91.389

0.578
  recA Streptococcus pyogenes NZ131

62.918

91.389

0.575
  recA Helicobacter pylori strain NCTC11637

62.918

91.389

0.575
  recA Streptococcus mutans UA159

62.349

92.222

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.947

93.889

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.805

91.111

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

91.667

0.572
  recA Streptococcus mitis SK321

61.934

91.944

0.569
  recA Streptococcus mitis NCTC 12261

61.934

91.944

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.96

96.111

0.567
  recA Streptococcus pneumoniae TIGR4

61.631

91.944

0.567
  recA Streptococcus pneumoniae R6

61.631

91.944

0.567
  recA Streptococcus pneumoniae Rx1

61.631

91.944

0.567
  recA Streptococcus pneumoniae D39

61.631

91.944

0.567