Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HH213_RS07830 Genome accession   NZ_CP051684
Coordinates   1687480..1688571 (-) Length   363 a.a.
NCBI ID   WP_110845365.1    Uniprot ID   -
Organism   Duganella dendranthematis strain AF9R3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1682480..1693571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH213_RS07805 (HH213_07805) - 1683143..1683628 (-) 486 WP_308494530.1 pilin -
  HH213_RS07810 (HH213_07810) - 1683802..1684380 (-) 579 WP_169111877.1 FHA domain-containing protein -
  HH213_RS07815 (HH213_07815) sucD 1684452..1685333 (-) 882 WP_110845362.1 succinate--CoA ligase subunit alpha -
  HH213_RS07820 (HH213_07820) sucC 1685347..1686513 (-) 1167 WP_110845363.1 ADP-forming succinate--CoA ligase subunit beta -
  HH213_RS07825 (HH213_07825) recX 1686946..1687398 (-) 453 WP_169111878.1 recombination regulator RecX -
  HH213_RS07830 (HH213_07830) recA 1687480..1688571 (-) 1092 WP_110845365.1 recombinase RecA Machinery gene
  HH213_RS07835 (HH213_07835) - 1688718..1689446 (+) 729 WP_169111879.1 response regulator transcription factor -
  HH213_RS07840 (HH213_07840) - 1689443..1690963 (+) 1521 WP_169111880.1 sensor histidine kinase -
  HH213_RS07845 (HH213_07845) - 1690956..1691243 (+) 288 WP_110845368.1 DUF4212 domain-containing protein -
  HH213_RS07850 (HH213_07850) - 1691285..1693294 (+) 2010 WP_169115034.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38599.29 Da        Isoelectric Point: 5.8930

>NTDB_id=440431 HH213_RS07830 WP_110845365.1 1687480..1688571(-) (recA) [Duganella dendranthematis strain AF9R3]
MDDKKGVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAPIEEVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDMVVVDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEILDLGVEAKIVEKSGSWYSYNGERVGQGKDNARIFLQER
PALAWEIENKVRESLGVRALPPLAGADTTVVKLKPAKPEADAA

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=440431 HH213_RS07830 WP_110845365.1 1687480..1688571(-) (recA) [Duganella dendranthematis strain AF9R3]
ATGGACGACAAAAAAGGCGTAGTACCTGCATCTGAAAAAGCCAAGGCGCTGGCAGCTGCGCTGGCCCAGATCGAAAAGCA
ATTCGGCAAGGGTTCCGTCATGCGCATGGACGCCAGTGCCCCGATCGAAGAAGTACAAGTGGTCTCGACCGGCTCGCTGG
GCCTGGACGTGGCACTGGGCGTCGGTGGCCTGCCGCGCGGCCGCGTGGTGGAAATCTATGGTCCGGAATCGTCGGGTAAA
ACCACGCTGACCCTGCAAACCATCGCCGAGATGCAAAAACTGGGCGGCACCTGCGCCTTTATCGACGCCGAGCATGCGCT
GGACGTCGGCTACGCGCAGAAACTGGGCGTCAACCTGCACGAGCTGCTGATTTCGCAGCCGGACACCGGCGAACAAGCGC
TGGAAATCTGCGACGCGCTGGTGCGTTCCGGTTCGGTCGACATGGTGGTGGTCGACTCGGTCGCCGCGCTGACGCCACGC
GCCGAGATCGAAGGCGATATGGGCGACTCGCTGCCAGGCCTGCAGGCACGCCTGATGTCGCAAGCGCTGCGCAAGCTGAC
CGGTTCGATCAACCGCACCAACACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGTTCGC
CGGAAACCACCACCGGCGGTAACGCGCTGAAGTTCTACGCCTCCGTGCGTCTGGACATCCGCCGCACCGGCTCGATCAAA
TCGGGCGATGAGGTGATCGGTAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGCA
CTTCGACATCCTGTACGGCGCCGGCACCTCGCGCGAAGGCGAAATCCTCGATCTGGGCGTGGAAGCCAAGATCGTCGAGA
AGTCGGGCTCGTGGTACAGCTACAACGGCGAACGCGTCGGCCAGGGCAAGGACAACGCCCGTATCTTCCTGCAAGAGCGT
CCGGCGCTGGCGTGGGAAATCGAAAACAAGGTGCGCGAATCGCTGGGCGTGCGCGCACTGCCGCCACTGGCCGGCGCCGA
CACCACCGTGGTCAAGCTGAAGCCGGCCAAACCGGAAGCCGACGCGGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.631

92.562

0.774
  recA Neisseria gonorrhoeae MS11

73.171

90.358

0.661
  recA Neisseria gonorrhoeae strain FA1090

73.171

90.358

0.661
  recA Neisseria gonorrhoeae MS11

73.171

90.358

0.661
  recA Acinetobacter baylyi ADP1

68.843

92.837

0.639
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

88.981

0.636
  recA Vibrio cholerae strain A1552

71.517

88.981

0.636
  recA Glaesserella parasuis strain SC1401

69.512

90.358

0.628
  recA Pseudomonas stutzeri DSM 10701

70.588

88.981

0.628
  recA Acinetobacter baumannii D1279779

70.279

88.981

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.265

91.46

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

90.083

0.59
  recA Helicobacter pylori 26695

64.417

89.807

0.579
  recA Streptococcus pneumoniae D39

59.04

97.521

0.576
  recA Streptococcus pneumoniae Rx1

59.04

97.521

0.576
  recA Streptococcus pneumoniae R6

59.04

97.521

0.576
  recA Streptococcus pneumoniae TIGR4

59.04

97.521

0.576
  recA Helicobacter pylori strain NCTC11637

64.11

89.807

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

90.909

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.614

90.634

0.567
  recA Streptococcus pyogenes NZ131

62.006

90.634

0.562
  recA Streptococcus mutans UA159

61.515

90.909

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

88.981

0.559
  recA Streptococcus mitis SK321

60.725

91.185

0.554
  recA Lactococcus lactis subsp. cremoris KW2

60.725

91.185

0.554
  recA Streptococcus mitis NCTC 12261

60.725

91.185

0.554