Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HH196_RS11310 Genome accession   NZ_CP051666
Coordinates   2316318..2317367 (+) Length   349 a.a.
NCBI ID   WP_169452219.1    Uniprot ID   A0A858R1D8
Organism   Marinobacterium sp. LSUCC0821     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2311318..2322367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH196_RS11290 (HH196_11290) rpoS 2311615..2312610 (+) 996 WP_169452215.1 RNA polymerase sigma factor RpoS -
  HH196_RS11295 (HH196_11295) fdxA 2312623..2312946 (-) 324 WP_169452216.1 ferredoxin FdxA -
  HH196_RS11300 (HH196_11300) mutS 2312983..2315589 (-) 2607 WP_169452217.1 DNA mismatch repair protein MutS -
  HH196_RS11305 (HH196_11305) - 2315760..2316236 (+) 477 WP_169452218.1 CinA family protein -
  HH196_RS11310 (HH196_11310) recA 2316318..2317367 (+) 1050 WP_169452219.1 recombinase RecA Machinery gene
  HH196_RS11315 (HH196_11315) - 2317402..2317890 (+) 489 WP_169452220.1 regulatory protein RecX -
  HH196_RS11320 (HH196_11320) alaS 2318093..2320687 (+) 2595 WP_169452398.1 alanine--tRNA ligase -
  HH196_RS11325 (HH196_11325) - 2320721..2321956 (+) 1236 WP_169452221.1 aspartate kinase -
  HH196_RS11330 (HH196_11330) csrA 2322058..2322246 (+) 189 WP_169452222.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37389.73 Da        Isoelectric Point: 5.1465

>NTDB_id=440370 HH196_RS11310 WP_169452219.1 2316318..2317367(+) (recA) [Marinobacterium sp. LSUCC0821]
MDQNRQKALDAALSQIERQFGKGAVMRMGDQPREAIPSVSTGSLGLDIALGIGGLPFGRIVEIYGPESSGKTTLTLQVIA
EAQRVGKTCAFVDAEHALDPIYAEKLGVDVDALLVSQPDTGEQALEITDMLVRSGAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGTVKQSNCLLVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKQGDEITGNE
TRVKVVKNKVAPPFRQAEFQIMYGSGIYHMGEVIDLGVQQKLIDKSGAWYAYNGDKIGQGKANAAKFLEENPAIAKEIEA
EIRNQLLAAPKKGKADDADAGESNAGLEF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=440370 HH196_RS11310 WP_169452219.1 2316318..2317367(+) (recA) [Marinobacterium sp. LSUCC0821]
ATGGATCAGAATCGTCAAAAAGCACTTGATGCTGCACTATCTCAGATCGAACGCCAATTTGGTAAAGGCGCAGTCATGCG
CATGGGCGATCAACCGCGTGAAGCTATCCCATCAGTTTCAACGGGTTCACTAGGACTAGACATCGCACTGGGTATTGGCG
GTCTGCCTTTTGGTCGTATCGTTGAGATCTATGGTCCGGAGTCTTCTGGTAAAACAACACTGACTCTGCAAGTAATCGCA
GAAGCGCAACGTGTTGGTAAAACCTGTGCATTCGTTGATGCTGAGCATGCACTGGATCCTATCTACGCCGAGAAACTGGG
TGTTGATGTAGATGCGCTTCTTGTTTCGCAGCCAGATACTGGTGAACAGGCGCTAGAAATCACTGATATGTTGGTGCGCT
CAGGTGCAGTGGATGTAATCATCGTCGACTCAGTTGCAGCACTTACACCAAAAGCGGAAATCGAAGGCGAGATGGGTGAC
TCTCACGTAGGCCTGCAGGCTCGTTTGATGTCGCAGGCACTGCGTAAGCTTACCGGTACAGTGAAACAGTCAAACTGTCT
GTTGGTGTTCATCAACCAGATCCGTATGAAAATTGGTGTTATGTTCGGTAACCCAGAGACAACAACTGGCGGTAACGCAC
TTAAGTTTTACGCATCAGTTCGTCTAGATATTCGCCGCACAGGTGCTGTGAAGCAGGGTGATGAAATCACCGGTAACGAG
ACACGCGTGAAGGTTGTTAAGAATAAGGTTGCACCACCATTCCGTCAGGCTGAGTTCCAGATTATGTATGGCAGCGGTAT
CTACCATATGGGTGAAGTAATCGACCTTGGTGTGCAGCAAAAGCTGATTGATAAGAGCGGTGCTTGGTATGCTTACAATG
GCGATAAGATTGGTCAGGGTAAAGCTAATGCTGCGAAGTTCCTTGAAGAGAATCCAGCGATTGCAAAAGAGATCGAAGCT
GAAATTCGAAATCAGTTGCTAGCGGCTCCTAAAAAAGGAAAAGCTGACGATGCCGATGCTGGTGAGAGCAACGCAGGGTT
AGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A858R1D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

82.388

95.989

0.791
  recA Vibrio cholerae strain A1552

72.414

99.713

0.722
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.414

99.713

0.722
  recA Acinetobacter baumannii D1279779

71.552

99.713

0.713
  recA Acinetobacter baylyi ADP1

75.841

93.696

0.711
  recA Glaesserella parasuis strain SC1401

71.765

97.421

0.699
  recA Neisseria gonorrhoeae MS11

69.006

97.994

0.676
  recA Neisseria gonorrhoeae MS11

69.006

97.994

0.676
  recA Neisseria gonorrhoeae strain FA1090

69.006

97.994

0.676
  recA Ralstonia pseudosolanacearum GMI1000

72.381

90.258

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

93.696

0.616
  recA Helicobacter pylori strain NCTC11637

63.609

93.696

0.596
  recA Helicobacter pylori 26695

63.609

93.696

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

63.975

92.264

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.012

96.275

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

60.815

91.404

0.556
  recA Streptococcus mutans UA159

59.385

93.123

0.553
  recA Streptococcus pyogenes NZ131

59.133

92.55

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.229

95.129

0.544
  recA Streptococcus mitis NCTC 12261

58.282

93.41

0.544
  recA Streptococcus mitis SK321

57.975

93.41

0.542
  recA Streptococcus pneumoniae Rx1

57.669

93.41

0.539
  recA Streptococcus pneumoniae D39

57.669

93.41

0.539
  recA Streptococcus pneumoniae R6

57.669

93.41

0.539
  recA Streptococcus pneumoniae TIGR4

57.669

93.41

0.539
  recA Lactococcus lactis subsp. cremoris KW2

57.276

92.55

0.53