Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HHJ57_RS11075 Genome accession   NZ_CP051641
Coordinates   2315078..2316157 (+) Length   359 a.a.
NCBI ID   WP_035687924.1    Uniprot ID   A0A0F5EUI0
Organism   Avibacterium paragallinarum strain ADL-AP02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2316779..2317195 2315078..2316157 flank 622


Gene organization within MGE regions


Location: 2315078..2317195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ57_RS11075 (HHJ57_11075) recA 2315078..2316157 (+) 1080 WP_035687924.1 recombinase RecA Machinery gene
  HHJ57_RS11080 (HHJ57_11080) recX 2316242..2316697 (+) 456 WP_035687900.1 recombination regulator RecX -
  HHJ57_RS11085 (HHJ57_11085) tnpA 2316779..2317195 (-) 417 WP_017805755.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38877.49 Da        Isoelectric Point: 4.7737

>NTDB_id=440159 HHJ57_RS11075 WP_035687924.1 2315078..2316157(+) (recA) [Avibacterium paragallinarum strain ADL-AP02]
MTTPEEKEKALAAALGQIEKQFGKGSIMKLGEKQDLDIEAISTGSLSLDVALGIGGLPMGRIVEIYGPESSGKTTLTLSV
IAQAQKLGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVEVVIVDSVAALTPKAEIEGDM
GDAHVGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRVGSIKDGEQIIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISREGELIELGVKHKLVNKSGSWFSYNGEKIGQGKANAMKWLVEHPEQASAL
ENKLREELLANPDKSLMADIEQAEQENDNNDVMDIESEF

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=440159 HHJ57_RS11075 WP_035687924.1 2315078..2316157(+) (recA) [Avibacterium paragallinarum strain ADL-AP02]
ATCACTACCCCAGAAGAAAAAGAAAAAGCACTGGCGGCTGCCTTAGGGCAAATTGAAAAGCAATTTGGTAAAGGTTCAAT
TATGAAGTTGGGCGAAAAGCAAGATTTGGACATTGAAGCAATTTCTACGGGATCATTGAGTTTAGATGTTGCGTTAGGCA
TCGGCGGCTTGCCAATGGGGCGTATTGTGGAAATTTACGGGCCAGAATCTTCAGGTAAAACCACATTAACCCTTTCTGTT
ATCGCACAAGCACAAAAATTAGGCAAAACCTGTGCCTTTATTGACGCTGAACACGCGTTAGATCCCATCTATGCGGCAAA
ACTGGGCGTTGATGTGAAAGAACTTCTCGTTTCTCAGCCTGATAATGGCGAGCAAGCCTTAGAGATCTGTGATGCGTTGG
TGCGTTCTGGTGCGGTTGAGGTTGTGATTGTGGACTCTGTCGCCGCATTGACACCAAAAGCGGAAATTGAAGGCGATATG
GGCGATGCTCACGTTGGCTTACAAGCCCGCTTAATGTCGCAAGCCTTGCGTAAACTCACGGGGCAAATCAAAAATTCAAA
CTGCTTGGTGGTGTTCATCAACCAAATACGTATGAAAATTGGCGTGATGTTTGGTAATCCTGAAACCACAACGGGGGGTA
ACGCGTTGAAATTCTATTCCTCCGTGCGTTTAGATATTCGCCGTGTGGGTTCGATTAAAGATGGCGAGCAGATTATCGGT
AACGAAACACGCGTAAAAGTGGTGAAAAACAAAGTTGCACCGCCGTTCCGTCAAGTGGATTTCCAAATTCTTTATGGCGA
AGGTATTTCTCGCGAAGGGGAGCTTATTGAGCTAGGTGTGAAACATAAATTAGTGAATAAATCGGGATCTTGGTTCTCTT
ACAATGGTGAGAAAATTGGGCAAGGAAAAGCCAACGCAATGAAATGGTTGGTTGAACACCCAGAACAAGCCTCAGCATTG
GAAAATAAATTGCGTGAAGAATTGCTGGCAAATCCAGATAAATCCTTAATGGCTGATATTGAACAAGCCGAGCAGGAAAA
TGACAATAATGATGTAATGGATATTGAGTCAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EUI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

74.93

98.886

0.741
  recA Vibrio cholerae strain A1552

74.631

94.429

0.705
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.631

94.429

0.705
  recA Pseudomonas stutzeri DSM 10701

75.077

90.529

0.68
  recA Neisseria gonorrhoeae MS11

74.224

89.694

0.666
  recA Neisseria gonorrhoeae MS11

74.224

89.694

0.666
  recA Neisseria gonorrhoeae strain FA1090

74.224

89.694

0.666
  recA Acinetobacter baylyi ADP1

67.442

95.822

0.646
  recA Ralstonia pseudosolanacearum GMI1000

73.016

87.744

0.641
  recA Acinetobacter baumannii D1279779

69.325

90.808

0.63
  recA Helicobacter pylori 26695

61.808

95.543

0.591
  recA Helicobacter pylori strain NCTC11637

61.808

95.543

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.095

93.593

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

89.694

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64

90.529

0.579
  recA Streptococcus pneumoniae D39

57.759

96.936

0.56
  recA Streptococcus pneumoniae TIGR4

57.759

96.936

0.56
  recA Streptococcus pneumoniae R6

57.759

96.936

0.56
  recA Streptococcus pneumoniae Rx1

57.759

96.936

0.56
  recA Streptococcus mutans UA159

61.231

90.529

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

89.415

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

91.922

0.552
  recA Streptococcus pyogenes NZ131

60.308

90.529

0.546
  recA Streptococcus mitis SK321

60.185

90.251

0.543
  recA Streptococcus mitis NCTC 12261

60.185

90.251

0.543
  recA Lactococcus lactis subsp. cremoris KW2

57.716

90.251

0.521