Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HGN31_RS12480 Genome accession   NZ_CP051542
Coordinates   2617392..2618465 (+) Length   357 a.a.
NCBI ID   WP_036711437.1    Uniprot ID   A0A099GE96
Organism   Paracoccus sanguinis strain OM2164     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2612392..2623465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGN31_RS12470 (HGN31_12470) - 2613831..2615954 (-) 2124 WP_168783399.1 ATP-binding protein -
  HGN31_RS12475 (HGN31_12475) - 2615999..2617159 (-) 1161 WP_168783400.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  HGN31_RS12480 (HGN31_12480) recA 2617392..2618465 (+) 1074 WP_036711437.1 recombinase RecA Machinery gene
  HGN31_RS12485 (HGN31_12485) alaS 2618816..2621476 (+) 2661 WP_168783401.1 alanine--tRNA ligase -
  HGN31_RS12490 (HGN31_12490) - 2621473..2621778 (+) 306 WP_036700055.1 DUF1330 domain-containing protein -
  HGN31_RS12495 (HGN31_12495) - 2621849..2622643 (+) 795 WP_168783402.1 class II glutamine amidotransferase -
  HGN31_RS12500 (HGN31_12500) - 2622719..2623060 (+) 342 WP_043130855.1 carboxymuconolactone decarboxylase family protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38274.58 Da        Isoelectric Point: 4.8912

>NTDB_id=439697 HGN31_RS12480 WP_036711437.1 2617392..2618465(+) (recA) [Paracoccus sanguinis strain OM2164]
MSGASILKMDDKRSADRQKALDSALAQIERQFGKGSIMRLGADNPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYARKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT
GAIKDRDEVVGNATKVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWYSYGDERIGQGRENAKQF
LRDNPDVAFAIEDRIRASHGLDFGAGPEGDDEALTEE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=439697 HGN31_RS12480 WP_036711437.1 2617392..2618465(+) (recA) [Paracoccus sanguinis strain OM2164]
ATGTCTGGGGCGAGCATCCTGAAGATGGACGACAAGCGTAGTGCGGACCGGCAGAAGGCGCTCGACAGCGCGCTGGCGCA
GATCGAGCGGCAGTTCGGCAAGGGCTCGATCATGCGCCTCGGCGCCGACAACCCGGTGGCCGAGATCGAGGCGACCTCGA
CCGGCTCGCTCGGGCTCGACATCGCGCTGGGGATCGGGGGTTTGCCGAAGGGGCGGATCATCGAGATCTTCGGGCCGGAA
AGCTCGGGCAAGACGACGCTGACGCTGCACGTGGTGGCGGAAGAGCAGAAGAAGGGCGGGGTCTGCGCCTTCGTGGATGC
CGAGCACGCGCTCGATCCGCAGTATGCGCGCAAGTTGGGCGTGAACCTTGACGAGTTGCTGATCTCGCAGCCCGACACCG
GCGAGCAGGCGCTCGAGATCGTCGATACACTGGTGCGCTCGGGAGCGGTCAGCCTCGTGGTGGTCGATTCGGTGGCGGCG
CTGACGCCCAAGTCCGAGATCGAGGGCGACATGGGCGACATGCAGATGGGCAGCCAGGCCCGTCTGATGAGCCAGGCGAT
GCGCAAGCTGACCGCCTCGATCGGGCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGGGTGA
TGTTCGGCAACCCCGAGACGACGACCGGCGGCAACGCACTCAAGTTCTACGCCTCGGTGCGTCTGGACATCCGGCGCACC
GGCGCGATCAAGGACCGCGACGAGGTGGTGGGCAACGCCACCAAGGTGAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTT
CCGGCAGGTCGAGTTCGACATCATGTACGGCGAGGGGATTTCGAAGGTCGGCGAGCTGATCGACCTGGGGGTCAAGGCCG
GCGTGGTCGAGAAATCCGGCGCTTGGTACTCCTATGGTGACGAGCGGATCGGGCAGGGTCGCGAGAACGCCAAGCAGTTC
CTGCGCGACAACCCCGACGTGGCCTTCGCCATCGAGGACCGTATCCGGGCGAGCCACGGACTCGATTTCGGCGCCGGGCC
CGAGGGGGACGACGAGGCGCTGACCGAGGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099GE96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

72.866

91.877

0.669
  recA Vibrio cholerae strain A1552

66.857

98.039

0.655
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.857

98.039

0.655
  recA Glaesserella parasuis strain SC1401

71.25

89.636

0.639
  recA Acinetobacter baylyi ADP1

69.512

91.877

0.639
  recA Pseudomonas stutzeri DSM 10701

70.807

90.196

0.639
  recA Neisseria gonorrhoeae MS11

68.788

92.437

0.636
  recA Neisseria gonorrhoeae MS11

68.788

92.437

0.636
  recA Neisseria gonorrhoeae strain FA1090

68.788

92.437

0.636
  recA Acinetobacter baumannii D1279779

69.207

91.877

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.507

96.639

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

67.683

91.877

0.622
  recA Helicobacter pylori strain NCTC11637

66.258

91.317

0.605
  recA Helicobacter pylori 26695

65.644

91.317

0.599
  recA Streptococcus mitis SK321

63.174

93.557

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.724

91.317

0.591
  recA Streptococcus mitis NCTC 12261

62.874

93.557

0.588
  recA Streptococcus pneumoniae D39

62.575

93.557

0.585
  recA Streptococcus pneumoniae TIGR4

62.575

93.557

0.585
  recA Streptococcus pneumoniae Rx1

62.575

93.557

0.585
  recA Streptococcus pneumoniae R6

62.575

93.557

0.585
  recA Streptococcus mutans UA159

61.212

92.437

0.566
  recA Streptococcus pyogenes NZ131

61.398

92.157

0.566
  recA Lactococcus lactis subsp. cremoris KW2

60.18

93.557

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

61.043

91.317

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

90.756

0.546