Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HG567_RS00725 Genome accession   NZ_CP051500
Coordinates   154184..155227 (+) Length   347 a.a.
NCBI ID   WP_000963119.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 149184..160227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG567_RS00690 (HG567_00690) - 149773..149991 (+) 219 WP_001847091.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HG567_RS00695 (HG567_00695) ccoP 149993..150871 (+) 879 WP_000346887.1 cytochrome-c oxidase, cbb3-type subunit III -
  HG567_RS00700 (HG567_00700) - 150882..151088 (+) 207 WP_060474299.1 DUF4006 family protein -
  HG567_RS00705 (HG567_00705) - 151189..151773 (+) 585 WP_202163853.1 hypothetical protein -
  HG567_RS00710 (HG567_00710) - 151786..152376 (+) 591 WP_202139798.1 hypothetical protein -
  HG567_RS00715 (HG567_00715) - 152459..153226 (+) 768 WP_202139799.1 hypothetical protein -
  HG567_RS00720 (HG567_00720) - 153223..154086 (-) 864 WP_202139800.1 menaquinone biosynthesis family protein -
  HG567_RS00725 (HG567_00725) recA 154184..155227 (+) 1044 WP_000963119.1 recombinase RecA Machinery gene
  HG567_RS00730 (HG567_00730) eno 155240..156520 (+) 1281 WP_150198730.1 phosphopyruvate hydratase -
  HG567_RS00735 (HG567_00735) - 156513..156788 (+) 276 WP_000146234.1 hypothetical protein -
  HG567_RS00740 (HG567_00740) - 156805..157401 (+) 597 WP_187230225.1 AMIN domain-containing protein -
  HG567_RS00745 (HG567_00745) - 157406..157894 (+) 489 WP_001164289.1 shikimate kinase -
  HG567_RS00750 (HG567_00750) - 157916..158872 (+) 957 WP_108299759.1 PDC sensor domain-containing protein -
  HG567_RS00755 (HG567_00755) - 158869..159972 (-) 1104 WP_202139801.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37638.39 Da        Isoelectric Point: 5.5216

>NTDB_id=439178 HG567_RS00725 WP_000963119.1 154184..155227(+) (recA) [Helicobacter pylori strain PUNO-003]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=439178 HG567_RS00725 WP_000963119.1 154184..155227(+) (recA) [Helicobacter pylori strain PUNO-003]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGTGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGACGTGTATTATGCTAAGAG
ATTGGGTGTGGATACGGAAAATCTACTCGTTTCCCAACCAAGCACAGGCGAAGAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTGGTGGTGGTGGATTCGGTGGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGGAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTCTCGTTTTTATTAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGTAACAGAGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGACTATGGCGTGAAATTAGACATTGTGGATAAGAGCGGGGCATGGCTTA
GTTATCAGGATAAAAAGTTAGGGCAAGGCCGAGAAAACGCTAAAGCCCTACTGAAAGAAGATAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGTTCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

98.559

100

0.986
  recA Helicobacter pylori 26695

97.983

100

0.98
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.744

94.524

0.735
  recA Neisseria gonorrhoeae MS11

66.154

93.66

0.62
  recA Neisseria gonorrhoeae MS11

66.154

93.66

0.62
  recA Neisseria gonorrhoeae strain FA1090

66.154

93.66

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

64.308

93.66

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

95.677

0.602
  recA Acinetobacter baumannii D1279779

63.303

94.236

0.597
  recA Acinetobacter baylyi ADP1

62.997

94.236

0.594
  recA Ralstonia pseudosolanacearum GMI1000

61.012

96.83

0.591
  recA Vibrio cholerae strain A1552

60.417

96.83

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.417

96.83

0.585
  recA Pseudomonas stutzeri DSM 10701

59.357

98.559

0.585
  recA Glaesserella parasuis strain SC1401

60.061

94.524

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

54.062

100

0.556
  recA Streptococcus pneumoniae D39

54.986

100

0.556
  recA Streptococcus pneumoniae Rx1

54.986

100

0.556
  recA Streptococcus pneumoniae R6

54.986

100

0.556
  recA Streptococcus pneumoniae TIGR4

54.986

100

0.556
  recA Streptococcus pyogenes NZ131

56.667

95.101

0.539
  recA Lactococcus lactis subsp. cremoris KW2

56.839

94.813

0.539
  recA Streptococcus mitis NCTC 12261

56.535

94.813

0.536
  recA Streptococcus mitis SK321

56.535

94.813

0.536
  recA Streptococcus mutans UA159

55.09

96.254

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

93.948

0.522