Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HGK49_RS00800 Genome accession   NZ_CP051434
Coordinates   161602..162645 (+) Length   347 a.a.
NCBI ID   WP_202132985.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 156602..167645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK49_RS00765 (HGK49_00765) - 157192..157410 (+) 219 WP_202132980.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HGK49_RS00770 (HGK49_00770) ccoP 157412..158290 (+) 879 WP_202132981.1 cytochrome-c oxidase, cbb3-type subunit III -
  HGK49_RS00775 (HGK49_00775) - 158301..158507 (+) 207 WP_000670499.1 DUF4006 family protein -
  HGK49_RS00780 (HGK49_00780) - 158608..159192 (+) 585 WP_202132982.1 hypothetical protein -
  HGK49_RS00785 (HGK49_00785) - 159204..159785 (+) 582 WP_180652184.1 hypothetical protein -
  HGK49_RS00790 (HGK49_00790) - 159873..160640 (+) 768 WP_202132983.1 hypothetical protein -
  HGK49_RS00795 (HGK49_00795) - 160637..161503 (-) 867 WP_202132984.1 menaquinone biosynthesis family protein -
  HGK49_RS00800 (HGK49_00800) recA 161602..162645 (+) 1044 WP_202132985.1 recombinase RecA Machinery gene
  HGK49_RS00805 (HGK49_00805) eno 162657..163937 (+) 1281 WP_202132986.1 phosphopyruvate hydratase -
  HGK49_RS00810 (HGK49_00810) - 163930..164205 (+) 276 WP_000146212.1 hypothetical protein -
  HGK49_RS00815 (HGK49_00815) - 164221..164817 (+) 597 WP_012443281.1 AMIN domain-containing protein -
  HGK49_RS00820 (HGK49_00820) - 164822..165310 (+) 489 WP_001216267.1 shikimate kinase -
  HGK49_RS00825 (HGK49_00825) - 165332..166288 (+) 957 WP_000952256.1 PDC sensor domain-containing protein -
  HGK49_RS00830 (HGK49_00830) - 166285..167397 (-) 1113 WP_202132987.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37683.43 Da        Isoelectric Point: 5.7176

>NTDB_id=438267 HGK49_RS00800 WP_202132985.1 161602..162645(+) (recA) [Helicobacter pylori strain ASHA-004]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQIEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=438267 HGK49_RS00800 WP_202132985.1 161602..162645(+) (recA) [Helicobacter pylori strain ASHA-004]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAATAGAAAAGATTGACTCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAAACCACTCTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGGGGCGTGTGTGCATTTATTGACGCTGAGCATGCCCTAGATGTGCATTATGCTAAGAG
GCTAGGCGTGGATACGGAAAACTTGCTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAGATGAA
CACCACTCTTATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCGGCTTTAAAACAAAACGAACAGCATATC
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCACCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.135

100

0.991
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.659

94.524

0.744
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

95.677

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

63.609

94.236

0.599
  recA Acinetobacter baylyi ADP1

63.303

94.236

0.597
  recA Ralstonia pseudosolanacearum GMI1000

61.607

96.83

0.597
  recA Pseudomonas stutzeri DSM 10701

60.526

98.559

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53