Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HGB54_RS08300 Genome accession   NZ_CP051299
Coordinates   1746066..1747136 (-) Length   356 a.a.
NCBI ID   WP_168916019.1    Uniprot ID   -
Organism   Microcella flavibacter strain WY83     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1741066..1752136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGB54_RS08280 dapF 1741687..1742565 (-) 879 WP_168916015.1 diaminopimelate epimerase -
  HGB54_RS08285 miaA 1742575..1743510 (-) 936 WP_168916016.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  HGB54_RS08290 miaB 1743507..1745123 (-) 1617 WP_168916017.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  HGB54_RS08295 - 1745164..1746063 (-) 900 WP_168916018.1 regulatory protein RecX -
  HGB54_RS08300 recA 1746066..1747136 (-) 1071 WP_168916019.1 recombinase RecA Machinery gene
  HGB54_RS08305 - 1747430..1747654 (-) 225 WP_168916020.1 DUF3046 domain-containing protein -
  HGB54_RS08310 - 1747769..1748074 (-) 306 WP_168916021.1 helix-turn-helix domain-containing protein -
  HGB54_RS08315 - 1748181..1748699 (-) 519 WP_168916022.1 CinA family protein -
  HGB54_RS08320 pgsA 1748707..1749327 (-) 621 WP_168916023.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37925.38 Da        Isoelectric Point: 5.5511

>NTDB_id=437327 HGB54_RS08300 WP_168916019.1 1746066..1747136(-) (recA) [Microcella flavibacter strain WY83]
MPSPADREKALETALAQIDRQFGKGSVMRLGSDERAPVEVIPTGSIALDVALGIGGLPKGRIIEIYGPESSGKTTLTLHA
IANVQKAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGSIDLVVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTGTSMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKEGTEAVG
NRTRVKVVKNKMAPPFKQAEFDIIYGVGISREGSLIDFGVEQEIVRKSGAWYTYDGDQLGQGKENARRYLLENPATAQEI
ENKILAKLGIGAAPAAAPAPVESIQPKIAQRKASGA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=437327 HGB54_RS08300 WP_168916019.1 1746066..1747136(-) (recA) [Microcella flavibacter strain WY83]
ATGCCCTCACCTGCAGACCGCGAGAAGGCCCTCGAGACCGCCCTCGCTCAGATCGACCGTCAGTTCGGCAAGGGCAGCGT
CATGCGCCTCGGCTCCGACGAGCGCGCCCCCGTCGAGGTGATCCCGACCGGCTCGATCGCGCTCGACGTCGCCCTCGGCA
TCGGCGGGCTCCCCAAGGGCCGCATCATCGAGATCTACGGCCCCGAGTCCTCCGGTAAGACCACGCTCACGCTGCACGCC
ATCGCGAACGTGCAGAAGGCCGGCGGCATCGCGGCCTTCATCGACGCCGAGCACGCGCTCGACCCCGACTACGCGCAGAA
GCTCGGCGTCGACATCGACCAGCTCCTCGTCTCGCAGCCCGACACCGGCGAGCAGGCGCTCGAGATCGCCGACATGCTCG
TGCGCTCGGGCTCCATCGACCTCGTCGTGATCGACTCGGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATG
GGCGACTCGCACGTCGGCCTGCAGGCCCGCCTCATGTCGCAGGCGCTGCGCAAGCTGACCGGTGGCCTCAACCAGACCGG
CACCTCGATGATCTTCATCAACCAGCTGCGCGAGAAGATCGGTGTGTTCTTCGGCAGCCCCGAGACGACCGCCGGCGGCA
AGGCGCTGAAGTTCTACGCGTCGGTGCGCCTCGACATCCGTCGCATCGAGACCCTGAAAGAGGGCACGGAGGCTGTCGGT
AACCGCACCCGCGTGAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCCGAGTTCGACATCATCTACGGCGT
CGGCATCTCTCGTGAGGGCAGCCTCATCGACTTCGGCGTCGAGCAGGAGATCGTGCGCAAGTCGGGCGCCTGGTACACCT
ACGACGGCGACCAGCTCGGTCAGGGCAAGGAGAACGCCCGTCGGTACCTGCTCGAGAACCCGGCGACCGCGCAGGAGATC
GAGAACAAGATCCTCGCCAAGCTCGGCATCGGCGCGGCCCCTGCCGCCGCTCCGGCCCCGGTCGAGTCGATCCAGCCGAA
GATCGCCCAGCGCAAGGCCTCGGGCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.667

95.225

0.635
  recA Acinetobacter baumannii D1279779

69.659

90.73

0.632
  recA Acinetobacter baylyi ADP1

69.35

90.73

0.629
  recA Ralstonia pseudosolanacearum GMI1000

67.073

92.135

0.618
  recA Neisseria gonorrhoeae MS11

67.178

91.573

0.615
  recA Neisseria gonorrhoeae strain FA1090

67.178

91.573

0.615
  recA Neisseria gonorrhoeae MS11

67.178

91.573

0.615
  recA Helicobacter pylori 26695

62.139

97.191

0.604
  recA Helicobacter pylori strain NCTC11637

62.139

97.191

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

91.573

0.604
  recA Vibrio cholerae strain A1552

67.085

89.607

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.085

89.607

0.601
  recA Streptococcus mitis SK321

60

98.315

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

91.573

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

62.918

92.416

0.581
  recA Lactococcus lactis subsp. cremoris KW2

62.424

92.697

0.579
  recA Streptococcus pneumoniae Rx1

62.121

92.697

0.576
  recA Streptococcus pneumoniae D39

62.121

92.697

0.576
  recA Streptococcus pneumoniae R6

62.121

92.697

0.576
  recA Streptococcus pneumoniae TIGR4

62.121

92.697

0.576
  recA Streptococcus pyogenes NZ131

62.195

92.135

0.573
  recA Streptococcus mitis NCTC 12261

61.818

92.697

0.573
  recA Glaesserella parasuis strain SC1401

63.24

90.169

0.57
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

92.416

0.567
  recA Streptococcus mutans UA159

60.79

92.416

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.633

91.854

0.548