Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HGB56_RS03930 Genome accession   NZ_CP051192
Coordinates   787932..789074 (-) Length   380 a.a.
NCBI ID   WP_003641504.1    Uniprot ID   A0A837NYD6
Organism   Lactiplantibacillus plantarum strain LP-F1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 782932..794074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGB56_RS03920 (HGB56_03925) - 785211..786017 (-) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -
  HGB56_RS03925 (HGB56_03930) rny 786142..787701 (-) 1560 WP_003644638.1 ribonuclease Y -
  HGB56_RS03930 (HGB56_03935) recA 787932..789074 (-) 1143 WP_003641504.1 recombinase RecA Machinery gene
  HGB56_RS03935 (HGB56_03940) cinA 789166..790428 (-) 1263 WP_013355708.1 competence/damage-inducible protein A Machinery gene
  HGB56_RS03940 (HGB56_03945) pgsA 790700..791284 (-) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HGB56_RS03945 (HGB56_03950) - 791307..792179 (-) 873 WP_003641501.1 RodZ domain-containing protein -
  HGB56_RS03950 (HGB56_03955) - 792283..793584 (-) 1302 WP_003644640.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40651.93 Da        Isoelectric Point: 5.3835

>NTDB_id=436820 HGB56_RS03930 WP_003641504.1 787932..789074(-) (recA) [Lactiplantibacillus plantarum strain LP-F1]
MADARKAALDTALKKIEKNFGKGAIMRMGDAAQTTISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRENAKKYLDEHPDVMTEIRQ
KVRDAYGMDATGEETSETDDQAKEAKDKGTAKNGSKGQSKSTKATPAETALDLGDQPTEK

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=436820 HGB56_RS03930 WP_003641504.1 787932..789074(-) (recA) [Lactiplantibacillus plantarum strain LP-F1]
TTGGCTGATGCACGGAAAGCAGCACTAGATACTGCCCTGAAAAAGATCGAAAAGAATTTCGGTAAAGGGGCGATTATGCG
GATGGGTGACGCTGCCCAGACGACTATTTCAACGATTTCAAGTGGATCGTTGGCCTTAGATGACGCGTTGGGTGTCGGCG
GCTACCCACGTGGTCGGATCGTGGAAATCTACGGTCCTGAAAGTTCAGGTAAAACGACCGTGGCACTACATGCGGTTGCT
GAAGTTCAAAAGCAGGGTGGTACGGCGGCCTATATCGATGCTGAAAACGCACTAGACCCCGTTTATGCGGAACACCTAGG
GGTCAACATTGATGACCTGTTACTTTCGCAACCAGATACTGGTGAACAAGGGCTTGAAATTGCAGATGCCTTAGTTTCCA
GTGGTGCGGTCGATATTTTAGTTGTTGACTCGGTGGCGGCCTTAGTGCCACGTGCCGAAATTGAAGGTGAAATGGGTGAC
GCACACGTTGGGTTACAAGCGCGGCTGATGTCACAAGCGCTCCGGAAGTTATCAGGGACATTGAACAAAACCAAGACAAT
CGCGTTATTTATCAATCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACGACTCCTGGTGGTCGGGCCT
TGAAATTTTACGCCACGATTCGTTTGGAAGTACGGCGGGCAGAACAGATCAAGGAAGGAACCAATATTATTGGTAACCGT
GTCCGGATCAAAGTCGTTAAGAACAAGGTTGCACCGCCATTTAAGCGTGCCGAAGTGGATATCATGTATGGTCAAGGTAT
CTCACAAACTGGTGAAATTGTTGATATGGCTGCTGAAAAGGATATTGTTAAGAAGAGTGGTTCTTGGTATTCATATGGTG
ACGATCGCATTGGTCAAGGCCGTGAAAATGCCAAGAAGTATTTGGACGAGCATCCTGATGTCATGACGGAGATTCGCCAA
AAGGTTCGTGATGCATACGGTATGGATGCAACTGGTGAAGAAACGTCTGAAACTGATGATCAGGCCAAAGAAGCTAAGGA
TAAGGGAACTGCTAAGAATGGCAGTAAGGGTCAAAGTAAGTCCACTAAAGCGACACCAGCGGAAACTGCTCTCGATCTCG
GCGACCAACCAACCGAAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837NYD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.412

89.474

0.755
  recA Bacillus subtilis subsp. subtilis str. 168

74.699

87.368

0.653
  recA Streptococcus pneumoniae D39

64.987

99.211

0.645
  recA Streptococcus pneumoniae R6

64.987

99.211

0.645
  recA Streptococcus pneumoniae TIGR4

64.987

99.211

0.645
  recA Streptococcus pneumoniae Rx1

64.987

99.211

0.645
  recA Streptococcus mitis SK321

63.395

99.211

0.629
  recA Streptococcus mitis NCTC 12261

63.13

99.211

0.626
  recA Streptococcus pyogenes NZ131

66.289

92.895

0.616
  recA Streptococcus mutans UA159

65.634

93.421

0.613
  recA Lactococcus lactis subsp. cremoris KW2

69.207

86.316

0.597
  recA Ralstonia pseudosolanacearum GMI1000

61.337

90.526

0.555
  recA Neisseria gonorrhoeae MS11

60.231

91.316

0.55
  recA Neisseria gonorrhoeae MS11

60.231

91.316

0.55
  recA Neisseria gonorrhoeae strain FA1090

60.231

91.316

0.55
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.884

90.526

0.542
  recA Vibrio cholerae strain A1552

59.884

90.526

0.542
  recA Acinetobacter baylyi ADP1

59.13

90.789

0.537
  recA Pseudomonas stutzeri DSM 10701

62.539

85

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

85.526

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.681

90.789

0.524
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

86.316

0.518
  recA Helicobacter pylori strain NCTC11637

57.185

89.737

0.513
  recA Acinetobacter baumannii D1279779

59.877

85.263

0.511
  recA Glaesserella parasuis strain SC1401

60.248

84.737

0.511
  recA Helicobacter pylori 26695

58.951

85.263

0.503