Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HEP74_RS11900 Genome accession   NZ_CP051190
Coordinates   2878793..2879842 (-) Length   349 a.a.
NCBI ID   WP_003471577.1    Uniprot ID   A0A7G7SXX1
Organism   Xanthomonas sp. SS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2873793..2884842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP74_RS11875 (HEP74_02344) - 2874024..2874194 (+) 171 WP_185813061.1 CsbD family protein -
  HEP74_RS11885 (HEP74_02346) csrA 2875075..2875287 (-) 213 WP_145700275.1 carbon storage regulator CsrA -
  HEP74_RS11890 (HEP74_02347) alaS 2875423..2878071 (-) 2649 WP_185813062.1 alanine--tRNA ligase -
  HEP74_RS11895 (HEP74_02348) recX 2878178..2878672 (-) 495 WP_185813063.1 recombination regulator RecX -
  HEP74_RS11900 (HEP74_02349) recA 2878793..2879842 (-) 1050 WP_003471577.1 recombinase RecA Machinery gene
  HEP74_RS11905 (HEP74_02350) lexA 2880027..2880662 (-) 636 WP_184414639.1 transcriptional repressor LexA -
  HEP74_RS11910 (HEP74_02351) - 2880814..2882490 (-) 1677 WP_185816602.1 AarF/UbiB family protein -
  HEP74_RS11915 (HEP74_02352) - 2882520..2883014 (-) 495 WP_185813064.1 CinA family protein -
  HEP74_RS11920 - 2883013..2883234 (+) 222 WP_185813065.1 hypothetical protein -
  HEP74_RS11925 (HEP74_02353) hflX 2883364..2884689 (-) 1326 WP_185813066.1 ribosome rescue GTPase HflX -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37491.08 Da        Isoelectric Point: 4.9761

>NTDB_id=436758 HEP74_RS11900 WP_003471577.1 2878793..2879842(-) (recA) [Xanthomonas sp. SS]
MDENKKRALAAALSQIEKQFGKGSVMRMGDRIIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAGKLGVNVDELLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGSERIGQGKDNSRQYLRDNPQVAAKL
ESELREKFQPTEVAPSAAEAEDADADAEA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=436758 HEP74_RS11900 WP_003471577.1 2878793..2879842(-) (recA) [Xanthomonas sp. SS]
ATGGACGAGAACAAGAAGCGCGCGCTCGCTGCTGCCCTGAGCCAGATCGAGAAACAGTTCGGCAAGGGTTCGGTGATGCG
GATGGGCGATCGCATCATCGAGGCCGTCGAGGTGATTCCGACCGGCTCGCTGATGCTGGATATCGCGCTGGGCATCGGCG
GCTTGCCGAAGGGCCGCGTCGTCGAGATATACGGCCCGGAATCCTCGGGCAAGACCACGCTGACCCTGCAGGCCATCGCC
GAGTGCCAGAAGAAGGGCGGCACCGCGGCCTTCATCGATGCCGAACATGCGCTGGACCCGATCTATGCCGGCAAGCTCGG
CGTCAACGTCGACGAACTGCTGCTGTCGCAGCCGGATACCGGCGAACAGGCTCTGGAAATCGCCGACATGCTGGTGCGTT
CGGGTTCGGTCGACATCGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGTTCCAACACGCT
GGTGGTGTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCCGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ATGCGTTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCAATCAAGAAAGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCGA
GGGCATCAGCCGCGAAGGCGAGCTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGGCCGGCGCCTGGTACAGCT
ACGGCAGCGAGCGCATCGGCCAGGGCAAGGACAATTCGCGCCAGTACCTGCGCGACAACCCGCAGGTGGCGGCGAAGCTG
GAAAGCGAGCTGCGCGAGAAGTTCCAGCCGACGGAAGTCGCGCCGAGCGCGGCCGAAGCCGAGGACGCCGACGCAGACGC
CGAGGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7SXX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

69.828

99.713

0.696
  recA Acinetobacter baylyi ADP1

70.674

97.708

0.691
  recA Vibrio cholerae strain A1552

68.678

99.713

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.678

99.713

0.685
  recA Acinetobacter baumannii D1279779

71.903

94.842

0.682
  recA Ralstonia pseudosolanacearum GMI1000

75.316

90.544

0.682
  recA Glaesserella parasuis strain SC1401

65.23

99.713

0.65
  recA Neisseria gonorrhoeae MS11

69.018

93.41

0.645
  recA Neisseria gonorrhoeae MS11

69.018

93.41

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.018

93.41

0.645
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

95.702

0.607
  recA Streptococcus mutans UA159

58.192

100

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

61.934

94.842

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

93.123

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.062

91.691

0.587
  recA Helicobacter pylori strain NCTC11637

60.542

95.129

0.576
  recA Streptococcus mitis SK321

60.976

93.983

0.573
  recA Helicobacter pylori 26695

60.241

95.129

0.573
  recA Streptococcus pyogenes NZ131

60.303

94.556

0.57
  recA Streptococcus pneumoniae TIGR4

60.366

93.983

0.567
  recA Streptococcus pneumoniae Rx1

60.366

93.983

0.567
  recA Streptococcus mitis NCTC 12261

60.366

93.983

0.567
  recA Streptococcus pneumoniae D39

60.366

93.983

0.567
  recA Streptococcus pneumoniae R6

60.366

93.983

0.567
  recA Lactococcus lactis subsp. cremoris KW2

59.385

93.123

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

93.41

0.55