Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HF888_RS03580 Genome accession   NZ_CP051183
Coordinates   788251..789339 (+) Length   362 a.a.
NCBI ID   WP_007018926.1    Uniprot ID   -
Organism   Bermanella marisrubri strain RED65     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 783251..794339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF888_RS03555 (HF888_03555) - 784168..784929 (-) 762 WP_007018975.1 adenosylcobinamide-GDP ribazoletransferase -
  HF888_RS03560 (HF888_03560) - 785333..785560 (+) 228 WP_007018930.1 hypothetical protein -
  HF888_RS03565 (HF888_03565) - 785700..786866 (+) 1167 WP_007018929.1 alpha-tubulin suppressor -
  HF888_RS03570 (HF888_03570) - 786882..787601 (+) 720 WP_007018928.1 DUF1499 domain-containing protein -
  HF888_RS03575 (HF888_03575) - 787620..788117 (+) 498 WP_007018927.1 CinA family protein -
  HF888_RS03580 (HF888_03580) recA 788251..789339 (+) 1089 WP_007018926.1 recombinase RecA Machinery gene
  HF888_RS03585 (HF888_03585) - 789580..790107 (+) 528 WP_007018925.1 regulatory protein RecX -
  HF888_RS03590 (HF888_03590) - 790159..790971 (+) 813 WP_007018924.1 class I SAM-dependent methyltransferase -
  HF888_RS03595 (HF888_03595) - 791014..792969 (-) 1956 WP_007018923.1 carboxypeptidase-like regulatory domain-containing protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38883.52 Da        Isoelectric Point: 5.3705

>NTDB_id=436693 HF888_RS03580 WP_007018926.1 788251..789339(+) (recA) [Bermanella marisrubri strain RED65]
MDQNRQKALDAALSQIERQFGKGAIMKMGEQPREAIPSVSTGSLSLDIALGIGGLPFGRIVEIYGPESSGKTTMCLSAMA
EAQKDGKTVAIVDAEHALDPSYAEKLGVDLDSLLVSQPDTGEQALEIVDSLVRSNAVDLIVVDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTANVKNANCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKNGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIMYNQGINRQAEIIDLGVKLGLVDKSGAWYAYKGDKIGQGKANACVYLQENPEVSKELEK
QIRDQLLVVAKPAEEKAEAEAQAEAPAAEAKPAKKTKAKEEA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=436693 HF888_RS03580 WP_007018926.1 788251..789339(+) (recA) [Bermanella marisrubri strain RED65]
ATGGACCAGAATCGCCAAAAAGCCCTAGACGCGGCTCTTAGTCAGATTGAACGTCAATTCGGTAAAGGCGCCATCATGAA
AATGGGCGAGCAACCCCGTGAGGCGATTCCTTCTGTATCAACCGGTTCACTATCATTGGACATTGCTCTAGGTATAGGCG
GCTTGCCATTTGGTCGTATCGTTGAGATTTATGGTCCTGAGTCTTCTGGTAAAACCACCATGTGTTTGTCCGCCATGGCA
GAAGCGCAAAAGGATGGTAAAACGGTTGCGATCGTTGATGCGGAGCATGCCTTAGATCCTTCTTATGCGGAAAAGCTGGG
TGTGGATCTTGATAGCCTGTTGGTATCTCAACCGGATACTGGTGAACAAGCTCTAGAGATTGTTGATAGCCTAGTGCGCT
CCAATGCGGTGGATCTGATTGTTGTTGACTCTGTGGCAGCGTTAACACCAAAAGCAGAAATTGAAGGTGACATGGGTGAC
TCCCACGTAGGCTTGCAGGCTCGTCTTATGTCACAAGCGTTACGTAAACTAACGGCGAATGTAAAAAATGCTAACTGTAT
GGTGATCTTCATTAACCAGATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCTGAAACCACAACCGGTGGTAACGCAC
TTAAGTTCTACTCTTCTGTCCGCTTGGATATTCGTCGCACAGGTGCTGTTAAGAACGGTGACGAAGTGGTAGGTAACGAA
ACTCGCGTTAAAGTAGTGAAAAACAAGGTTGCTCCACCGTTTAAACAAGCGGAATTCCAAATCATGTATAACCAAGGTAT
CAACCGTCAGGCGGAAATCATTGATTTGGGTGTGAAGCTTGGTTTAGTGGATAAGTCTGGTGCTTGGTACGCTTACAAGG
GCGATAAGATTGGTCAGGGTAAAGCCAATGCTTGTGTCTATCTTCAGGAGAACCCAGAAGTTAGTAAAGAACTTGAAAAG
CAAATCCGTGATCAACTGTTAGTGGTTGCTAAGCCAGCAGAAGAAAAAGCGGAAGCGGAAGCACAAGCGGAAGCGCCTGC
TGCAGAGGCGAAACCCGCAAAAAAGACTAAAGCGAAAGAAGAAGCATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.812

95.304

0.732
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.618

90.331

0.674
  recA Vibrio cholerae strain A1552

74.618

90.331

0.674
  recA Acinetobacter baylyi ADP1

69.653

95.58

0.666
  recA Acinetobacter baumannii D1279779

69.706

93.923

0.655
  recA Neisseria gonorrhoeae MS11

67.723

95.856

0.649
  recA Neisseria gonorrhoeae MS11

67.723

95.856

0.649
  recA Neisseria gonorrhoeae strain FA1090

67.723

95.856

0.649
  recA Glaesserella parasuis strain SC1401

71.296

89.503

0.638
  recA Ralstonia pseudosolanacearum GMI1000

68.421

89.227

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

90.331

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

88.95

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.078

92.265

0.564
  recA Streptococcus mitis SK321

59.118

93.923

0.555
  recA Streptococcus mitis NCTC 12261

57.925

95.856

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

60.423

91.436

0.552
  recA Streptococcus pneumoniae Rx1

57.02

96.409

0.55
  recA Streptococcus pneumoniae R6

57.02

96.409

0.55
  recA Streptococcus pneumoniae TIGR4

57.02

96.409

0.55
  recA Streptococcus pneumoniae D39

57.02

96.409

0.55
  recA Helicobacter pylori strain NCTC11637

60.856

90.331

0.55
  recA Helicobacter pylori 26695

60.856

90.331

0.55
  recA Streptococcus mutans UA159

57.267

95.028

0.544
  recA Streptococcus pyogenes NZ131

59.443

89.227

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

90.055

0.525
  recA Lactococcus lactis subsp. cremoris KW2

56.347

89.227

0.503