Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HCG48_RS06795 Genome accession   NZ_CP051167
Coordinates   1688578..1689669 (-) Length   363 a.a.
NCBI ID   WP_168568475.1    Uniprot ID   A0A6H1TWK7
Organism   Oxynema aestuarii AP17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683578..1694669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCG48_RS06780 (HCG48_06780) - 1683939..1686332 (-) 2394 WP_246259943.1 glycoside hydrolase family 31 protein -
  HCG48_RS06785 (HCG48_06785) - 1686531..1687355 (+) 825 WP_168568473.1 hypothetical protein -
  HCG48_RS06790 (HCG48_06790) - 1687663..1688478 (+) 816 WP_168568474.1 hypothetical protein -
  HCG48_RS06795 (HCG48_06795) recA 1688578..1689669 (-) 1092 WP_168568475.1 recombinase RecA Machinery gene
  HCG48_RS06800 (HCG48_06800) xseA 1689961..1691184 (+) 1224 WP_168568476.1 exodeoxyribonuclease VII large subunit -
  HCG48_RS06805 (HCG48_06805) - 1691188..1691967 (-) 780 WP_168568477.1 HAD family hydrolase -
  HCG48_RS06810 (HCG48_06810) - 1692212..1692457 (-) 246 Protein_1366 DUF1830 domain-containing protein -
  HCG48_RS06815 (HCG48_06815) - 1692811..1693047 (-) 237 WP_168568478.1 hypothetical protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39149.51 Da        Isoelectric Point: 4.7820

>NTDB_id=436499 HCG48_RS06795 WP_168568475.1 1688578..1689669(-) (recA) [Oxynema aestuarii AP17]
MAIETTLNPEKEKALKMVLTQIERSFGKGSIMRLGDATRMKVETIASGALTLDLALGGGLPKGRVIEVYGPESAGKTTVA
LHAIAEVQKMGGVAAFVDAEHALDPTYASQVGVDIANLLVSQPDTGEMALEIADQLVRSAAVDIVVIDSVAALVPRAEIE
GQMGDASIGLQARLMSHALRKITGNIGKSGCTVIFLNQLRQKIGGYGNPETTTGGNALKFYASVRLDIRRIQTLKKGSEE
YGIRAKVKVAKNKVAPPFRIAEFDILFGKGISRLGCLLDLAEETKVVNRKGAWYNYNGENIGQGRDNATTYLEENPEMAL
EVEQKVREQLELGVVVSANSVGKSNNDGEDGEYEEYEEYEDNE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=436499 HCG48_RS06795 WP_168568475.1 1688578..1689669(-) (recA) [Oxynema aestuarii AP17]
ATGGCTATAGAAACTACCCTTAACCCCGAAAAAGAGAAAGCCCTCAAAATGGTGCTGACGCAGATCGAGCGCAGCTTTGG
CAAAGGCTCGATCATGCGCCTCGGGGACGCCACCCGGATGAAAGTCGAAACCATCGCCAGTGGCGCCCTGACCTTAGATT
TAGCCTTGGGCGGCGGCTTACCCAAAGGACGGGTGATCGAAGTCTACGGACCGGAGAGTGCGGGTAAAACCACCGTCGCC
CTCCACGCGATCGCCGAAGTCCAGAAAATGGGAGGCGTCGCCGCCTTCGTAGACGCGGAACACGCCCTCGATCCGACCTA
TGCGTCCCAAGTCGGCGTCGATATCGCCAACCTGCTCGTTTCCCAACCCGACACCGGGGAAATGGCCCTCGAAATTGCCG
ACCAACTAGTGCGGTCCGCCGCCGTCGATATCGTCGTGATCGACTCCGTAGCCGCCCTAGTCCCTCGCGCCGAAATCGAA
GGACAGATGGGAGATGCCTCCATCGGCTTGCAAGCGCGCTTGATGAGCCACGCCTTGCGTAAAATTACCGGAAATATCGG
TAAATCCGGCTGTACCGTCATTTTCCTCAACCAATTGCGCCAAAAAATCGGCGGTTATGGCAACCCGGAAACCACCACCG
GGGGGAACGCCCTCAAATTCTACGCTTCCGTCCGTCTCGACATCCGCCGCATTCAAACTCTGAAGAAAGGATCGGAAGAA
TACGGGATTCGCGCCAAAGTTAAAGTCGCTAAAAATAAAGTCGCCCCGCCATTCCGGATTGCCGAATTCGACATTCTCTT
CGGTAAAGGCATTTCCCGCCTCGGTTGCTTGCTCGACCTCGCCGAAGAAACCAAAGTCGTCAATCGTAAAGGCGCTTGGT
ATAACTACAACGGCGAGAATATCGGTCAAGGGCGGGATAATGCGACCACCTATTTAGAAGAAAATCCCGAAATGGCCCTC
GAAGTCGAACAGAAAGTGCGCGAACAGCTCGAACTCGGCGTGGTCGTGTCCGCGAATTCTGTCGGTAAATCGAACAACGA
CGGGGAAGATGGGGAGTATGAGGAATACGAAGAATACGAAGATAACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H1TWK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.417

89.807

0.579
  recA Pseudomonas stutzeri DSM 10701

62.202

92.562

0.576
  recA Acinetobacter baumannii D1279779

64.11

89.807

0.576
  recA Ralstonia pseudosolanacearum GMI1000

66.881

85.675

0.573
  recA Glaesserella parasuis strain SC1401

56.901

97.796

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

61.538

89.532

0.551
  recA Neisseria gonorrhoeae MS11

60.802

89.256

0.543
  recA Neisseria gonorrhoeae strain FA1090

60.802

89.256

0.543
  recA Neisseria gonorrhoeae MS11

60.802

89.256

0.543
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.123

89.807

0.54
  recA Vibrio cholerae strain A1552

60.123

89.807

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.209

92.287

0.537
  recA Helicobacter pylori strain NCTC11637

59.633

90.083

0.537
  recA Helicobacter pylori 26695

59.633

90.083

0.537
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.908

95.592

0.534
  recA Streptococcus mitis NCTC 12261

54.986

96.694

0.532
  recA Latilactobacillus sakei subsp. sakei 23K

60.312

88.154

0.532
  recA Streptococcus mitis SK321

56.845

92.562

0.526
  recA Streptococcus pneumoniae Rx1

56.548

92.562

0.523
  recA Streptococcus pneumoniae D39

56.548

92.562

0.523
  recA Streptococcus pneumoniae R6

56.548

92.562

0.523
  recA Streptococcus pneumoniae TIGR4

56.548

92.562

0.523
  recA Lactococcus lactis subsp. cremoris KW2

58.333

89.256

0.521
  recA Streptococcus mutans UA159

55.952

92.562

0.518
  recA Streptococcus pyogenes NZ131

56.193

91.185

0.512
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.74

90.083

0.493