Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   INP97_RS03465 Genome accession   NZ_CP063113
Coordinates   704159..704671 (+) Length   170 a.a.
NCBI ID   WP_197563225.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C147_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 699159..709671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP97_RS03445 (INP97_03440) psiE 699245..699661 (+) 417 WP_049365746.1 phosphate-starvation-inducible protein PsiE -
  INP97_RS03450 (INP97_03445) - 699697..700542 (-) 846 WP_197563219.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP97_RS09705 - 700606..701298 (-) 693 Protein_668 penicillin-binding protein 1A -
  INP97_RS03455 (INP97_03450) - 701374..703224 (-) 1851 Protein_669 penicillin-binding protein 1A -
  INP97_RS03460 (INP97_03455) comA 703324..704172 (+) 849 WP_197563223.1 competence protein ComA Machinery gene
  INP97_RS03465 (INP97_03460) comB 704159..704671 (+) 513 WP_197563225.1 competence protein ComB Machinery gene
  INP97_RS03470 (INP97_03465) comC 704668..705210 (+) 543 WP_197563227.1 competence protein ComC Machinery gene
  INP97_RS03475 (INP97_03470) - 705210..705593 (+) 384 WP_197563228.1 pilus assembly protein PilP -
  INP97_RS03480 (INP97_03475) comE 705595..706977 (+) 1383 WP_197563230.1 type IV pilus secretin PilQ Machinery gene
  INP97_RS03485 (INP97_03480) - 706997..707686 (+) 690 WP_197563232.1 ComF family protein -
  INP97_RS03490 (INP97_03485) nfuA 707801..708385 (+) 585 WP_049365763.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20313.44 Da        Isoelectric Point: 6.4912

>NTDB_id=436499 INP97_RS03465 WP_197563225.1 704159..704671(+) (comB) [Haemophilus parainfluenzae strain M1C147_1]
MLSLNLLPWRLEQHQKAFRRFMWQGLIWLACSVLIVIGLNQLNEQQAQTLNQTKEKLTQITHQVHQKRIQVQQLQRDLKE
MNELTEMETEYVYRLLNLLSELPLQQGELDVFTLNAKQVVLSGMTENQQEFEAIHQFLKRHFTEVNLTKFQPVQQQLFFQ
FDIHLSEPVQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=436499 INP97_RS03465 WP_197563225.1 704159..704671(+) (comB) [Haemophilus parainfluenzae strain M1C147_1]
ATGTTAAGTCTTAATCTATTGCCTTGGCGCTTAGAACAACATCAAAAGGCCTTTCGTCGTTTTATGTGGCAAGGTTTAAT
TTGGCTAGCTTGCTCAGTGTTGATTGTCATTGGATTGAACCAACTCAATGAACAACAAGCGCAAACCCTAAATCAGACAA
AAGAAAAACTGACACAAATTACTCATCAAGTCCATCAGAAGCGCATTCAAGTTCAACAACTACAACGTGACTTGAAAGAA
ATGAATGAGTTGACTGAAATGGAAACGGAATATGTGTATCGCCTGCTTAACTTATTAAGTGAGTTACCCTTACAACAAGG
TGAGTTAGATGTATTTACGCTCAATGCTAAGCAAGTTGTCCTTTCTGGCATGACGGAAAATCAACAAGAATTTGAAGCAA
TACATCAATTTCTTAAACGCCATTTTACCGAGGTTAATTTAACCAAGTTTCAACCGGTGCAACAACAGTTATTCTTTCAG
TTTGATATTCATTTATCGGAGCCTGTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

41.358

95.294

0.394
  comB Haemophilus influenzae Rd KW20

41.358

95.294

0.394