Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HF520_RS08800 Genome accession   NZ_CP051144
Coordinates   1843077..1844132 (-) Length   351 a.a.
NCBI ID   WP_168573669.1    Uniprot ID   A0A6H1X0U9
Organism   Romboutsia sp. CE17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838077..1849132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF520_RS08785 (HF520_08785) - 1839134..1839895 (+) 762 WP_168573667.1 DeoR/GlpR family DNA-binding transcription regulator -
  HF520_RS08790 (HF520_08790) - 1840144..1841127 (-) 984 WP_168573668.1 hypothetical protein -
  HF520_RS08795 (HF520_08795) rny 1841301..1842842 (-) 1542 WP_168574803.1 ribonuclease Y -
  HF520_RS08800 (HF520_08800) recA 1843077..1844132 (-) 1056 WP_168573669.1 recombinase RecA Machinery gene
  HF520_RS08805 (HF520_08805) pgsA 1844592..1845134 (-) 543 WP_168573670.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HF520_RS08810 (HF520_08810) rimO 1845121..1846458 (-) 1338 WP_168573671.1 30S ribosomal protein S12 methylthiotransferase RimO -
  HF520_RS08815 (HF520_08815) mnmH 1846452..1847510 (-) 1059 WP_168573672.1 tRNA 2-selenouridine(34) synthase MnmH -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38092.56 Da        Isoelectric Point: 5.0709

>NTDB_id=436197 HF520_RS08800 WP_168573669.1 1843077..1844132(-) (recA) [Romboutsia sp. CE17]
MSIEQEKLKALNLALGKIEKDFGKGSVMRLGEATSMNIDVIPTGSIGLDIAIGIGGLPKGRIIEIYGPESSGKTTVALHT
VAEAQKQGGIAAFIDAEHALDPVYAKALGVDIDNLIISQPDTGEQALEITEALIRSNAIDIIVVDSVAALVPRAEIEGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVLG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADIDIVKKSGAWYSYNDIKLGQGRENVKKFLQDNMDLTNEI
DAKVRAHYKLDEAKDNAVDHEDNESIDNFEE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=436197 HF520_RS08800 WP_168573669.1 1843077..1844132(-) (recA) [Romboutsia sp. CE17]
ATGAGTATAGAACAAGAAAAGTTAAAAGCCCTAAACCTTGCATTAGGGAAAATAGAAAAAGATTTTGGTAAGGGTTCAGT
TATGAGACTTGGAGAAGCTACATCTATGAACATAGATGTTATACCTACAGGTTCTATAGGTCTTGATATAGCAATTGGTA
TAGGAGGTCTTCCAAAAGGAAGAATAATAGAGATATATGGTCCAGAATCTTCTGGTAAGACAACAGTTGCTCTTCATACG
GTTGCAGAAGCACAAAAACAAGGTGGAATAGCTGCATTTATAGATGCAGAGCATGCACTAGATCCAGTTTATGCAAAGGC
TTTAGGTGTAGATATAGATAACTTAATAATATCTCAACCGGATACAGGGGAACAAGCATTAGAAATAACAGAAGCTTTAA
TAAGAAGTAATGCAATAGATATAATAGTTGTAGACTCAGTTGCAGCATTAGTTCCAAGAGCTGAAATAGAAGGTGATATG
GGAGACTCTCATGTTGGTCTTCAAGCTAGACTTATGTCTCAAGCATTAAGAAAATTAACAGGATCAATTAAAAAGTCTAA
CTGTGTTGCAATATTCATCAACCAATTAAGAGAAAAAGTTGGTATAATGTTTGGTAATCCAGAAACAACAACAGGTGGTA
GAGCGCTTAAGTTCTATTCATCAGTAAGACTTGATGTTAGAAAAATAGATACTATAAAACAAGGTGATAAAGTTTTAGGA
AGTAGAACTAGAGTTAAAGTTGTAAAAAATAAAGTGGCTCCTCCATTTAAACAGGCAGAGTTTGACATAATGTATGGAGA
AGGTATATCTAAGATAGGTGATTTATTAGATATAGCTGCAGATATTGATATAGTTAAAAAGTCGGGAGCTTGGTATAGCT
ATAATGACATAAAACTTGGGCAAGGTAGAGAGAATGTTAAAAAATTCTTACAAGATAATATGGATTTAACTAATGAAATA
GATGCAAAAGTAAGAGCTCATTATAAGTTAGATGAAGCAAAAGATAATGCTGTTGATCATGAAGATAACGAAAGTATAGA
TAATTTTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H1X0U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

66.097

100

0.661
  recA Streptococcus mitis SK321

68.035

97.151

0.661
  recA Streptococcus mitis NCTC 12261

68.035

97.151

0.661
  recA Streptococcus pneumoniae TIGR4

66.86

98.006

0.655
  recA Streptococcus pneumoniae Rx1

66.86

98.006

0.655
  recA Streptococcus pneumoniae D39

66.86

98.006

0.655
  recA Streptococcus pneumoniae R6

66.86

98.006

0.655
  recA Bacillus subtilis subsp. subtilis str. 168

70.497

91.738

0.647
  recA Streptococcus pyogenes NZ131

68.502

93.162

0.638
  recA Latilactobacillus sakei subsp. sakei 23K

63.743

97.436

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.758

94.017

0.618
  recA Lactococcus lactis subsp. cremoris KW2

65.957

93.732

0.618
  recA Acinetobacter baumannii D1279779

62.609

98.291

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

97.721

0.61
  recA Acinetobacter baylyi ADP1

63.018

96.296

0.607
  recA Pseudomonas stutzeri DSM 10701

62.985

95.442

0.601
  recA Glaesserella parasuis strain SC1401

60

99.715

0.598
  recA Neisseria gonorrhoeae MS11

67.524

88.604

0.598
  recA Neisseria gonorrhoeae MS11

67.524

88.604

0.598
  recA Neisseria gonorrhoeae strain FA1090

67.524

88.604

0.598
  recA Helicobacter pylori strain NCTC11637

64.11

92.877

0.595
  recA Helicobacter pylori 26695

64.11

92.877

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.467

92.023

0.584
  recA Vibrio cholerae strain A1552

63.467

92.023

0.584
  recA Ralstonia pseudosolanacearum GMI1000

65.161

88.319

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.123

92.877

0.558