Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HFP51_RS04260 Genome accession   NZ_CP051130
Coordinates   897900..898979 (+) Length   359 a.a.
NCBI ID   WP_176874524.1    Uniprot ID   -
Organism   Parasphingopyxis sp. CP4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 892900..903979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFP51_RS04235 (HFP51_04240) dapA 892983..893864 (+) 882 WP_176874520.1 4-hydroxy-tetrahydrodipicolinate synthase -
  HFP51_RS04240 (HFP51_04245) smpB 893867..894349 (+) 483 WP_176874521.1 SsrA-binding protein SmpB -
  HFP51_RS04245 (HFP51_04250) - 894372..894932 (+) 561 WP_176874522.1 DUF2062 domain-containing protein -
  HFP51_RS04250 (HFP51_04255) - 894932..897397 (+) 2466 WP_255454852.1 response regulator -
  HFP51_RS04255 (HFP51_04260) - 897451..897807 (+) 357 WP_176874523.1 response regulator -
  HFP51_RS04260 (HFP51_04265) recA 897900..898979 (+) 1080 WP_176874524.1 recombinase RecA Machinery gene
  HFP51_RS04265 (HFP51_04270) - 899098..899724 (+) 627 WP_176874525.1 glutathione S-transferase family protein -
  HFP51_RS04270 (HFP51_04275) alaS 899782..902427 (+) 2646 WP_176874526.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38552.02 Da        Isoelectric Point: 4.9109

>NTDB_id=436100 HFP51_RS04260 WP_176874524.1 897900..898979(+) (recA) [Parasphingopyxis sp. CP4]
MAAHLKVIDSNGKKDDMDRQKALDAALAQIDRAFGKGSAMKLGSREAIEIDSVSTGSLGLDIALGIGGLPKGRIIEIYGP
ESSGKTTLALHTIAEAQKIGGTAAFIDAEHALDPGYAKKLGVDIDELIISQPDTGEQALEIADTLVRSNAVDILVIDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSINRSKCMVIFINQIRMKIGVMYGSPETTSGGNALKFYASVRLDIRR
IGQIKDRDEIVGNATRVKVVKNKVAPPFKQVEFDIMYGQGISKMGEILDLGVKAGIVEKSGSWFSYDSTRIGQGRENSKA
FLLENPEICEKIESQIRGKEEEVAEEMMSGPDADSGSDE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=436100 HFP51_RS04260 WP_176874524.1 897900..898979(+) (recA) [Parasphingopyxis sp. CP4]
ATGGCAGCCCATCTCAAAGTCATCGATTCCAACGGAAAAAAGGACGATATGGACAGGCAAAAGGCGCTCGACGCCGCACT
CGCGCAGATTGACCGGGCCTTTGGCAAGGGATCAGCGATGAAATTGGGATCGCGCGAAGCGATCGAAATCGATTCGGTAT
CAACCGGATCGCTGGGTCTCGACATTGCGCTCGGCATTGGCGGTTTGCCCAAAGGCCGGATCATCGAGATTTACGGGCCG
GAAAGCTCAGGCAAGACGACCCTGGCACTGCACACGATTGCCGAGGCGCAAAAGATTGGGGGCACGGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGGTTATGCGAAGAAGCTGGGCGTCGATATCGACGAGCTGATTATTTCCCAACCCGATA
CGGGCGAACAGGCCCTGGAAATCGCTGATACGCTGGTGCGGTCGAACGCGGTCGACATTCTCGTTATCGATTCAGTTGCA
GCACTGGTACCGCGCGCAGAAATTGAAGGTGAGATGGGCGACAGCCATGTCGGCCTGCAGGCGCGGCTGATGAGCCAGGC
ACTGCGCAAGCTCACCGGCTCGATCAATCGGTCGAAATGCATGGTGATCTTTATCAACCAGATTCGCATGAAAATCGGTG
TCATGTATGGCAGCCCGGAAACCACATCGGGCGGCAATGCACTGAAATTCTATGCCAGCGTCCGGCTCGACATTCGCCGA
ATTGGCCAGATCAAGGATCGCGATGAGATTGTTGGCAACGCGACCCGTGTTAAGGTGGTGAAGAACAAGGTCGCGCCGCC
GTTCAAACAGGTCGAGTTCGACATCATGTATGGCCAGGGCATCTCAAAGATGGGCGAGATACTCGATCTCGGGGTCAAAG
CCGGCATTGTCGAGAAATCCGGATCCTGGTTCTCCTATGATTCGACCCGGATCGGGCAGGGGCGTGAAAATTCGAAAGCC
TTCCTGCTCGAAAACCCCGAAATCTGCGAGAAGATCGAAAGTCAGATTCGCGGCAAGGAAGAAGAAGTTGCCGAGGAAAT
GATGAGCGGTCCGGACGCAGACAGCGGATCGGACGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

70.679

90.251

0.638
  recA Glaesserella parasuis strain SC1401

71.16

88.858

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

70.312

89.136

0.627
  recA Acinetobacter baumannii D1279779

69.565

89.694

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.116

95.822

0.624
  recA Ralstonia pseudosolanacearum GMI1000

72.078

85.794

0.618
  recA Acinetobacter baylyi ADP1

68.944

89.694

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.875

93.872

0.618
  recA Vibrio cholerae strain A1552

65.875

93.872

0.618
  recA Streptococcus pneumoniae R6

60.331

100

0.61
  recA Streptococcus pneumoniae Rx1

60.331

100

0.61
  recA Streptococcus pneumoniae D39

60.331

100

0.61
  recA Streptococcus pneumoniae TIGR4

60.331

100

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.768

91.365

0.61
  recA Helicobacter pylori 26695

64.118

94.708

0.607
  recA Neisseria gonorrhoeae MS11

67.913

89.415

0.607
  recA Neisseria gonorrhoeae MS11

67.913

89.415

0.607
  recA Neisseria gonorrhoeae strain FA1090

67.913

89.415

0.607
  recA Helicobacter pylori strain NCTC11637

63.824

94.708

0.604
  recA Streptococcus mitis NCTC 12261

62.463

94.986

0.593
  recA Streptococcus mitis SK321

62.17

94.986

0.591
  recA Streptococcus mutans UA159

58.127

100

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

65

89.136

0.579
  recA Streptococcus pyogenes NZ131

60.641

95.543

0.579
  recA Lactococcus lactis subsp. cremoris KW2

60.778

93.036

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

89.972

0.54