Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FOB43_RS01970 Genome accession   NZ_CP050992
Coordinates   405407..406459 (+) Length   350 a.a.
NCBI ID   WP_043611947.1    Uniprot ID   A0A5C1DD38
Organism   Chromobacterium violaceum strain FDAARGOS_635     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 400407..411459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB43_RS01950 (FOB43_01950) - 400796..401134 (-) 339 WP_043595814.1 YbaB/EbfC family nucleoid-associated protein -
  FOB43_RS01955 (FOB43_01955) dnaX 401140..403059 (-) 1920 WP_168227044.1 DNA polymerase III subunit gamma/tau -
  FOB43_RS01960 (FOB43_01960) mltB 403156..404196 (-) 1041 WP_168227045.1 lytic murein transglycosylase B -
  FOB43_RS01965 (FOB43_01965) hrcA 404228..405250 (-) 1023 WP_043595811.1 heat-inducible transcriptional repressor HrcA -
  FOB43_RS01970 (FOB43_01970) recA 405407..406459 (+) 1053 WP_043611947.1 recombinase RecA Machinery gene
  FOB43_RS01975 (FOB43_01975) recX 406459..406917 (+) 459 WP_011135158.1 recombination regulator RecX -
  FOB43_RS01980 (FOB43_01980) - 406921..407379 (+) 459 WP_168227046.1 SRPBCC domain-containing protein -
  FOB43_RS01985 (FOB43_01985) alaS 407444..410077 (+) 2634 WP_011135156.1 alanine--tRNA ligase -
  FOB43_RS01990 (FOB43_01990) - 410192..410674 (+) 483 WP_011135155.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37829.09 Da        Isoelectric Point: 4.8780

>NTDB_id=435787 FOB43_RS01970 WP_043611947.1 405407..406459(+) (recA) [Chromobacterium violaceum strain FDAARGOS_635]
MASEDKSKALAAALAQIEKQFGKGSIMRMSDNQITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQA
VAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIG
NDTRVKVVKNKVSPPFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIGQGKDNTREWLKANPAIADEI
ERKIREAVGVKIEINENQGDEEFADDAFDA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=435787 FOB43_RS01970 WP_043611947.1 405407..406459(+) (recA) [Chromobacterium violaceum strain FDAARGOS_635]
ATGGCTTCCGAAGACAAGAGCAAGGCGCTGGCCGCTGCCCTGGCCCAGATTGAAAAGCAATTTGGCAAGGGCTCGATCAT
GCGCATGAGCGACAACCAGATCACCGAAAACCTGCAAGTGATCTCCACCGGCTCGCTGACCCTGGACCTGGCGCTGGGCG
TCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAAATCTACGGCCCGGAGTCGTCGGGTAAAACCACCTTGTGTCTGCAGGCC
GTGGCCGAGGCGCAAAAACTGGGCGGCACCTGCGCCTACATCGACGCCGAAAACGCGCTGGACCCGGTTTACGCGCAGAA
GCTGGGCGTCAACGTCGAAGACCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGCGACATGCTGG
TTCGCTCCAGCGGCGTGGACGTGATCGTGGTCGACTCCGTCGCCGCGCTGGTGCCCAAGGCTGAAATCGAGGGCGAGATG
GGCGACAGCCACGTCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAA
CACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACCGGCGGCATCAAGAAGGGCGAGGAAGTGATCGGC
AACGACACTCGCGTCAAAGTGGTGAAGAACAAGGTGTCCCCGCCGTTCCGCCAGGCCGATTTCGAAATCCTGTACGGCGA
GGGCATCTCGCGCCAGGGCGAAATCATCGAGCTGGGCGTCAAGCACGGCTTCATCGACAAGTCCGGCGCCTGGTACGCGT
ACAACGGCCAGAAGATCGGCCAGGGCAAGGACAACACCCGCGAATGGCTGAAAGCCAACCCGGCCATCGCCGACGAGATC
GAGCGCAAGATCCGCGAAGCGGTGGGCGTGAAGATCGAAATCAACGAAAACCAGGGCGACGAAGAGTTCGCCGACGACGC
CTTCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1DD38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

78.466

96.857

0.76
  recA Neisseria gonorrhoeae strain FA1090

78.466

96.857

0.76
  recA Neisseria gonorrhoeae MS11

78.466

96.857

0.76
  recA Ralstonia pseudosolanacearum GMI1000

78.025

89.714

0.7
  recA Pseudomonas stutzeri DSM 10701

75.466

92

0.694
  recA Glaesserella parasuis strain SC1401

72.477

93.429

0.677
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.308

92.857

0.671
  recA Vibrio cholerae strain A1552

72.308

92.857

0.671
  recA Acinetobacter baylyi ADP1

69.512

93.714

0.651
  recA Acinetobacter baumannii D1279779

69.659

92.286

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

95.429

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.832

96.857

0.609
  recA Helicobacter pylori 26695

63.855

94.857

0.606
  recA Helicobacter pylori strain NCTC11637

63.855

94.857

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

64.11

93.143

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

63.03

94.286

0.594
  recA Streptococcus mutans UA159

59.42

98.571

0.586
  recA Streptococcus pneumoniae R6

56.901

100

0.577
  recA Streptococcus pneumoniae Rx1

56.901

100

0.577
  recA Streptococcus pneumoniae D39

56.901

100

0.577
  recA Streptococcus pneumoniae TIGR4

56.901

100

0.577
  recA Streptococcus mitis NCTC 12261

58.601

98

0.574
  recA Lactococcus lactis subsp. cremoris KW2

60

94.286

0.566
  recA Streptococcus pyogenes NZ131

59.697

94.286

0.563
  recA Streptococcus mitis SK321

58.788

94.286

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.927

93.714

0.543