Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EGM181_RS00340 Genome accession   NZ_CP050485
Coordinates   39077..40123 (+) Length   348 a.a.
NCBI ID   WP_113848999.1    Uniprot ID   -
Organism   Enterococcus gallinarum strain EGM181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 34077..45123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM181_RS00320 (EGM181_00325) yfmH 34423..35721 (+) 1299 WP_103300716.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EGM181_RS00325 (EGM181_00330) - 36054..36959 (+) 906 WP_003128979.1 RodZ domain-containing protein -
  EGM181_RS00330 (EGM181_00335) pgsA 37071..37652 (+) 582 WP_005473048.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EGM181_RS00335 (EGM181_00340) cinA 37735..38973 (+) 1239 WP_003128983.1 competence/damage-inducible protein A Machinery gene
  EGM181_RS00340 (EGM181_00345) recA 39077..40123 (+) 1047 WP_113848999.1 recombinase RecA Machinery gene
  EGM181_RS00345 (EGM181_00350) rny 40375..41949 (+) 1575 WP_029487351.1 ribonuclease Y -
  EGM181_RS00350 (EGM181_00355) treR 42058..42774 (-) 717 WP_003128986.1 trehalose operon repressor -
  EGM181_RS00355 (EGM181_00360) pgmB 42828..43478 (-) 651 WP_003128987.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37504.68 Da        Isoelectric Point: 4.8221

>NTDB_id=433240 EGM181_RS00340 WP_113848999.1 39077..40123(+) (recA) [Enterococcus gallinarum strain EGM181]
MADDRKAALDAALKKIEKNYGKGAVMKLGEKVDQQISTIPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
EVQKGGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNR
TKIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGRENAKNYMREHQEMMMEVSA
RVRDAYGIGTGETVIETEDAQEELPLDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=433240 EGM181_RS00340 WP_113848999.1 39077..40123(+) (recA) [Enterococcus gallinarum strain EGM181]
TTGGCAGATGATCGTAAAGCAGCTTTAGATGCTGCACTGAAAAAGATTGAAAAGAACTATGGTAAAGGTGCCGTTATGAA
ACTTGGTGAGAAAGTCGATCAACAAATTTCGACGATTCCAAGTGGTTCATTGGCTTTGGATGTTGCTTTAGGTGTGGGTG
GTTATCCACGTGGACGTATTGTTGAAGTATATGGACCAGAAAGTTCTGGTAAAACGACAGTTGCTTTACACGCAATCGCT
GAAGTTCAAAAAGGTGGCGGAACAGCAGCCTTTATTGATGCAGAACATGCATTAGATCCTCAATATGCACAAAAATTGGG
TGTAAATATCGATGATTTGCTGCTATCTCAGCCCGATACAGGTGAGCAAGGTCTTGAGATCGCTGATGCTTTAGTATCAA
GTGGAGCTGTCGATATTGTTGTTATCGACTCGGTTGCCGCTTTGGTACCAAGAGCTGAGATCGATGGTGAGATGGGTGAT
ACCCACGTTGGTCTTCAAGCCCGGTTGATGTCTCAAGCATTGCGTAAATTATCTGGATCAATCAATAAGACCAAAACAAT
TGCGATTTTTATCAATCAAATTCGTGAAAAAGTTGGGATCATGTTCGGTAATCCTGAAACAACTCCTGGTGGACGTGCGC
TTAAATTCTATTCGACGATTCGATTAGAGGTACGACGTGCAGAACAATTAAAATCCGGGACAGACATTATCGGAAACCGG
ACAAAAATCAAAGTTGTCAAAAATAAAGTAGCGCCACCTTTTAAAGTTGCTGAAGTAGACATGATGTATGGACAAGGAAT
CTCTCAAGAGGGAGAGTTGCTTGATATGGCAGTAGAGCAAGACATTGTTGATAAGAGCGGTGCTTGGTATGCTTATAAAG
GAGATCGCATTGGTCAGGGGCGGGAAAACGCGAAAAACTATATGCGTGAACATCAAGAAATGATGATGGAAGTTTCTGCT
CGTGTTCGCGATGCGTACGGCATTGGTACCGGAGAAACGGTCATTGAAACAGAAGATGCGCAAGAAGAACTACCATTAGA
CGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.472

97.989

0.779
  recA Bacillus subtilis subsp. subtilis str. 168

77.231

93.391

0.721
  recA Streptococcus pneumoniae D39

65.278

100

0.675
  recA Streptococcus pneumoniae R6

65.278

100

0.675
  recA Streptococcus pneumoniae TIGR4

65.278

100

0.675
  recA Streptococcus pneumoniae Rx1

65.278

100

0.675
  recA Streptococcus mitis NCTC 12261

65.449

100

0.67
  recA Streptococcus mutans UA159

66.667

100

0.667
  recA Streptococcus mitis SK321

64.607

100

0.661
  recA Streptococcus pyogenes NZ131

68.882

95.115

0.655
  recA Lactococcus lactis subsp. cremoris KW2

68.389

94.54

0.647
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.222

94.54

0.598
  recA Neisseria gonorrhoeae MS11

61.398

94.54

0.58
  recA Neisseria gonorrhoeae MS11

61.398

94.54

0.58
  recA Neisseria gonorrhoeae strain FA1090

61.398

94.54

0.58
  recA Ralstonia pseudosolanacearum GMI1000

61.28

94.253

0.578
  recA Acinetobacter baumannii D1279779

58.48

98.276

0.575
  recA Acinetobacter baylyi ADP1

61.42

93.103

0.572
  recA Pseudomonas stutzeri DSM 10701

61.61

92.816

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.486

94.54

0.572
  recA Helicobacter pylori 26695

56.772

99.713

0.566
  recA Helicobacter pylori strain NCTC11637

56.772

99.713

0.566
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.877

93.103

0.557
  recA Vibrio cholerae strain A1552

59.877

93.103

0.557
  recA Glaesserella parasuis strain SC1401

59.627

92.529

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.769

93.391

0.549