Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G4G31_RS01630 Genome accession   NZ_CP050451
Coordinates   339450..340541 (-) Length   363 a.a.
NCBI ID   WP_182990019.1    Uniprot ID   A0A7G5ZIQ9
Organism   Massilia sp. Se16.2.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 334450..345541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G31_RS01605 (G4G31_01600) sucC 335231..336400 (-) 1170 WP_182990014.1 ADP-forming succinate--CoA ligase subunit beta -
  G4G31_RS01610 (G4G31_01605) - 336464..337027 (-) 564 WP_182990015.1 DUF2889 domain-containing protein -
  G4G31_RS01615 (G4G31_01610) - 337343..338392 (+) 1050 WP_182990016.1 YgcG family protein -
  G4G31_RS01620 (G4G31_01615) - 338408..338812 (-) 405 WP_182990017.1 hypothetical protein -
  G4G31_RS01625 (G4G31_01620) recX 338946..339404 (-) 459 WP_182990018.1 recombination regulator RecX -
  G4G31_RS01630 (G4G31_01625) recA 339450..340541 (-) 1092 WP_182990019.1 recombinase RecA Machinery gene
  G4G31_RS01635 (G4G31_01630) - 340733..341437 (+) 705 WP_182990020.1 response regulator transcription factor -
  G4G31_RS01640 (G4G31_01635) - 341434..342971 (+) 1538 Protein_349 sensor histidine kinase N-terminal domain-containing protein -
  G4G31_RS01645 (G4G31_01640) - 342961..343287 (+) 327 WP_182990021.1 DUF4212 domain-containing protein -
  G4G31_RS01650 (G4G31_01645) - 343284..345332 (+) 2049 Protein_351 VC_2705 family sodium/solute symporter -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38798.34 Da        Isoelectric Point: 6.3121

>NTDB_id=432827 G4G31_RS01630 WP_182990019.1 339450..340541(-) (recA) [Massilia sp. Se16.2.3]
MDDKKVVHNASEKGKALAAALAQIEKQFGKGSVMRMDTNAPVEEVQTVSTGSLGLDIALGVGGLPRGRIVEIYGPESSGK
TTLTLQTIAQMQKLGGTCAFIDAEHALDVGYAQKLGIKLDELLISQPDTGEQALEITDALVRSGSVDLVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTASINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEILDLGADNKVVEKSGSWYSYNGERIGQGKDNARQFLKDR
PALAREIENKVRSALGVRELPPVAAEAGAPAEEKAPKLKAVSE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=432827 G4G31_RS01630 WP_182990019.1 339450..340541(-) (recA) [Massilia sp. Se16.2.3]
ATGGACGACAAAAAAGTAGTACACAACGCCTCGGAAAAAGGCAAGGCACTGGCCGCCGCCCTCGCGCAAATCGAAAAGCA
GTTCGGCAAGGGTTCGGTCATGCGCATGGATACCAACGCGCCTGTCGAGGAGGTGCAAACCGTCTCGACCGGTTCGCTGG
GGCTGGACATCGCACTCGGCGTCGGCGGCTTGCCGCGCGGCCGTATCGTGGAAATCTACGGTCCGGAATCGTCGGGTAAA
ACCACGCTGACCCTGCAGACCATCGCGCAAATGCAAAAGCTGGGTGGCACCTGCGCGTTCATCGACGCCGAGCACGCGCT
CGACGTGGGCTACGCACAGAAGCTGGGCATCAAGCTCGACGAGCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCAC
TCGAGATCACCGACGCACTCGTGCGTTCGGGTTCGGTCGACCTCGTGGTCATCGACTCGGTGGCGGCACTGACCCCGCGC
GCCGAAATCGAAGGCGACATGGGCGATTCGCTGCCTGGCCTGCAAGCCCGTCTGATGTCGCAGGCACTACGCAAGCTGAC
CGCCTCGATCAACCGTACGAACACCCTGGTGATCTTCATTAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCC
CGGAAACCACGACCGGCGGTAATGCGCTGAAGTTCTACGCCTCCGTGCGTCTGGACATCCGCCGTACCGGCTCGATCAAG
TCTGGCGACGAGGTCATCGGTAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCCCA
CTTCGACATCCTGTACGGAGAAGGCACCTCGCGCGAAGGCGAAATCCTGGATCTGGGCGCCGATAACAAGGTCGTCGAGA
AGTCGGGTTCCTGGTACAGCTACAACGGCGAGCGTATCGGTCAAGGCAAGGACAATGCCCGTCAGTTCCTGAAGGACCGT
CCGGCACTGGCCCGCGAGATCGAGAACAAGGTTCGCAGCGCCCTGGGCGTGCGTGAACTGCCGCCGGTTGCTGCCGAAGC
GGGTGCCCCTGCTGAAGAGAAGGCACCGAAGCTGAAGGCCGTGTCGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G5ZIQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.143

92.562

0.76
  recA Neisseria gonorrhoeae MS11

72.256

90.358

0.653
  recA Neisseria gonorrhoeae MS11

72.256

90.358

0.653
  recA Neisseria gonorrhoeae strain FA1090

72.256

90.358

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.622

93.939

0.645
  recA Vibrio cholerae strain A1552

68.622

93.939

0.645
  recA Glaesserella parasuis strain SC1401

70.988

89.256

0.634
  recA Acinetobacter baylyi ADP1

70.898

88.981

0.631
  recA Acinetobacter baumannii D1279779

70.588

88.981

0.628
  recA Pseudomonas stutzeri DSM 10701

70.279

88.981

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.565

90.634

0.603
  recA Helicobacter pylori 26695

61.628

94.766

0.584
  recA Streptococcus pneumoniae R6

59.104

98.347

0.581
  recA Streptococcus pneumoniae D39

59.104

98.347

0.581
  recA Streptococcus pneumoniae Rx1

59.104

98.347

0.581
  recA Streptococcus pneumoniae TIGR4

59.104

98.347

0.581
  recA Helicobacter pylori strain NCTC11637

61.337

94.766

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

90.083

0.579
  recA Streptococcus mutans UA159

62.952

91.46

0.576
  recA Streptococcus pyogenes NZ131

63.526

90.634

0.576
  recA Streptococcus mitis NCTC 12261

62.236

91.185

0.567
  recA Streptococcus mitis SK321

62.236

91.185

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

62.121

90.909

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.355

93.113

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.195

90.358

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.27

89.807

0.559