Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GU3_RS15495 Genome accession   NC_016745
Coordinates   3290032..3291102 (-) Length   356 a.a.
NCBI ID   WP_014293474.1    Uniprot ID   H2FUV0
Organism   Oceanimonas sp. GK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3285032..3296102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU3_RS15455 (GU3_15055) - 3285292..3285540 (-) 249 WP_014293470.1 OadG family protein -
  GU3_RS15480 (GU3_15060) csrA 3286377..3286568 (-) 192 WP_014293471.1 carbon storage regulator CsrA -
  GU3_RS15485 (GU3_15065) alaS 3286774..3289401 (-) 2628 WP_014293472.1 alanine--tRNA ligase -
  GU3_RS15490 (GU3_15070) - 3289504..3289968 (-) 465 WP_014293473.1 regulatory protein RecX -
  GU3_RS15495 (GU3_15075) recA 3290032..3291102 (-) 1071 WP_014293474.1 recombinase RecA Machinery gene
  GU3_RS15500 (GU3_15080) - 3291178..3291672 (-) 495 WP_148265924.1 CinA family protein -
  GU3_RS15505 (GU3_15085) mutS 3291786..3294365 (+) 2580 WP_193372557.1 DNA mismatch repair protein MutS -
  GU3_RS15510 (GU3_15090) rpoS 3294468..3295448 (-) 981 WP_014293477.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38125.75 Da        Isoelectric Point: 5.1777

>NTDB_id=43279 GU3_RS15495 WP_014293474.1 3290032..3291102(-) (recA) [Oceanimonas sp. GK1]
MDQNKEKALAAALGQIEKQFGKGSIMRLGDNKALNVEAISTGSLSLDIALGIGGLPTGRIVEIYGPESSGKTTLTLQVIA
EAQRAGKVCAFVDAEHALDPVYAGKLGVNVDDLLVSQPDTGEQALEICDMLVRSGAVDVIIVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTANIKSANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIMYGAGISKEGELIELGVKHKLIEKAGAWYSYKGDKIGQGKANSIKYLLEHKNISDEIEQ
QLRQMLLLAPGATKDEGDVKGEAVTELDGPDGNNEF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=43279 GU3_RS15495 WP_014293474.1 3290032..3291102(-) (recA) [Oceanimonas sp. GK1]
ATGGATCAGAACAAAGAAAAAGCCTTGGCCGCCGCCCTGGGCCAGATTGAAAAACAGTTTGGCAAGGGCTCCATCATGCG
TTTGGGCGACAACAAGGCTTTGAATGTTGAAGCCATTTCCACCGGCTCCCTGTCTCTGGACATTGCGCTGGGCATTGGTG
GCCTACCTACCGGCCGTATCGTAGAAATCTACGGCCCCGAGTCCTCCGGTAAAACCACCCTGACCCTGCAGGTGATCGCC
GAGGCGCAACGCGCCGGCAAGGTGTGTGCCTTTGTCGATGCCGAACACGCGCTGGATCCGGTCTACGCCGGCAAGCTGGG
CGTGAACGTGGACGATCTGCTGGTATCCCAGCCCGATACCGGTGAGCAGGCGCTGGAAATCTGCGACATGCTGGTGCGTT
CCGGCGCGGTAGACGTGATTATCGTCGACTCGGTGGCGGCGCTGACGCCCCGTGCCGAAATTGAAGGTGAAATGGGGGAT
TCCCATGTTGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGAGTGCCAACTGCCT
GTGTATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAATGCCC
TCAAGTTCTACGCCTCCGTGCGCCTCGACATTCGCCGTATCGGCTCCATCAAGGAAGGCGATGAGGTGGTGGGTAACGAA
ACCCGGGTCAAGGTGGTGAAGAACAAGGTAGCGCCGCCGTTCAAGCAGGCTGAGTTCCAGATCATGTATGGCGCGGGCAT
TTCCAAGGAAGGCGAGCTGATTGAGCTGGGCGTGAAGCACAAGCTTATCGAAAAGGCCGGTGCCTGGTACAGCTACAAGG
GCGACAAGATTGGCCAGGGCAAGGCCAACTCCATCAAATACCTGCTGGAGCACAAGAACATCTCCGACGAAATTGAACAG
CAACTGCGTCAGATGCTGCTGCTGGCGCCGGGGGCGACCAAGGATGAAGGCGACGTCAAGGGCGAGGCGGTCACCGAGCT
GGACGGCCCGGATGGCAACAACGAATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H2FUV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.24

93.82

0.753
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.428

91.854

0.739
  recA Vibrio cholerae strain A1552

80.428

91.854

0.739
  recA Acinetobacter baylyi ADP1

75.229

91.854

0.691
  recA Glaesserella parasuis strain SC1401

69.405

99.157

0.688
  recA Acinetobacter baumannii D1279779

74.618

91.854

0.685
  recA Neisseria gonorrhoeae MS11

70.554

96.348

0.68
  recA Neisseria gonorrhoeae MS11

70.554

96.348

0.68
  recA Neisseria gonorrhoeae strain FA1090

70.554

96.348

0.68
  recA Ralstonia pseudosolanacearum GMI1000

73.333

88.483

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.743

96.067

0.612
  recA Streptococcus pneumoniae R6

60.845

99.719

0.607
  recA Streptococcus pneumoniae TIGR4

60.845

99.719

0.607
  recA Streptococcus pneumoniae Rx1

60.845

99.719

0.607
  recA Streptococcus pneumoniae D39

60.845

99.719

0.607
  recA Streptococcus mitis SK321

60.057

97.753

0.587
  recA Streptococcus mitis NCTC 12261

62.84

92.978

0.584
  recA Helicobacter pylori 26695

63.077

91.292

0.576
  recA Helicobacter pylori strain NCTC11637

63.077

91.292

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.169

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

92.978

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.585

92.135

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

62.069

89.607

0.556
  recA Streptococcus pyogenes NZ131

61.3

90.73

0.556
  recA Streptococcus mutans UA159

60.681

90.73

0.551
  recA Lactococcus lactis subsp. cremoris KW2

59.443

90.73

0.539

Multiple sequence alignment