Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HCG51_RS06780 Genome accession   NZ_CP050440
Coordinates   1684136..1685212 (+) Length   358 a.a.
NCBI ID   WP_167720042.1    Uniprot ID   A0A6G9SC12
Organism   Tolypothrix sp. PCC 7910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1679136..1690212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCG51_RS06760 (HCG51_06760) - 1681002..1681289 (+) 288 WP_167720034.1 hypothetical protein -
  HCG51_RS06765 (HCG51_06765) - 1681430..1682185 (-) 756 WP_167720036.1 class I SAM-dependent methyltransferase -
  HCG51_RS06770 (HCG51_06770) - 1682257..1682955 (-) 699 WP_167720038.1 hypothetical protein -
  HCG51_RS06775 (HCG51_06775) - 1683243..1683668 (+) 426 WP_167720040.1 hypothetical protein -
  HCG51_RS06780 (HCG51_06780) recA 1684136..1685212 (+) 1077 WP_167720042.1 recombinase RecA Machinery gene
  HCG51_RS06785 (HCG51_06785) - 1685554..1686324 (-) 771 WP_244329266.1 FHA domain-containing protein -
  HCG51_RS06790 (HCG51_06790) - 1687541..1689157 (-) 1617 WP_167720046.1 serine/threonine-protein kinase -
  HCG51_RS06795 (HCG51_06795) - 1689745..1690032 (-) 288 WP_167720048.1 TMEM165/GDT1 family protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38409.75 Da        Isoelectric Point: 4.8913

>NTDB_id=432706 HCG51_RS06780 WP_167720042.1 1684136..1685212(+) (recA) [Tolypothrix sp. PCC 7910]
MAINTDTSGKQKALNIVLNQIERSFGKGAIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HAIAEVQREGGIAAFVDAEHALDPTYAGALGVDIENLLVSQPDTGEAALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGVSTIGCLVDLAEETGILLRKGAWYSYNGENISQGRDNAIKYLEEKPEFAA
QIKQLVREKLDKGAVVSANSVTKVNDDEEDEEVDLDEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=432706 HCG51_RS06780 WP_167720042.1 1684136..1685212(+) (recA) [Tolypothrix sp. PCC 7910]
ATGGCTATCAACACCGATACTTCTGGCAAGCAAAAAGCGCTGAATATTGTACTCAACCAGATTGAGCGCAGCTTTGGTAA
GGGAGCAATCATGCGCCTCGGGGATGCTACTCGGATGCGAGTAGAGACCATTTCCACTGGGGCACTCACCTTAGATCTAG
CATTGGGTGGAGGTTTACCCAAGGGACGGGTAATTGAGATTTACGGGCCGGAAAGTTCCGGGAAAACAACAGTAGCGCTA
CATGCGATCGCTGAAGTGCAACGTGAAGGTGGTATTGCTGCCTTTGTAGATGCTGAACACGCCCTTGATCCCACCTACGC
TGGGGCTTTGGGTGTAGATATTGAAAATCTTCTGGTTTCCCAACCAGATACTGGTGAAGCAGCATTGGAAATTGTCGATC
AGCTTGTGCGCTCTGCTGCTGTTGACATTGTAGTAATTGACTCTGTGGCAGCATTAGTCCCTCGGGCGGAAATAGAAGGC
GATATGGGCGATGCTCACGTTGGTCTCCAAGCTCGACTCATGAGCCAAGCTTTACGCAAAATTACTGGCAATATTGGTAA
ATCTGGTTGCACAGTAATTTTTATTAACCAATTACGGCAAAAAATCGGTGTCACCTACGGTAGCCCAGAAACCACCACGG
GTGGTAACGCCTTAAAATTCTACGCCTCTGTGCGCTTAGATATTCGCCGGATTCAAACCTTGAAAAAAGGCACAGATGAA
TTTGGTAACCGTGTCAAAGTCAAGGTAGCAAAAAATAAAGTAGCACCGCCCTTTAGAATTGCCGAATTTGACATTATTTT
TGGTAAGGGAGTTTCTACTATAGGATGTCTTGTTGACCTTGCTGAAGAAACTGGTATCTTACTCCGCAAAGGAGCTTGGT
ATAGCTACAATGGCGAAAATATTTCCCAAGGTAGAGACAACGCCATCAAATACTTAGAAGAAAAACCAGAATTTGCTGCA
CAAATTAAGCAGTTAGTACGTGAAAAGCTAGACAAGGGAGCTGTTGTTTCTGCTAACTCTGTAACCAAGGTCAATGATGA
TGAGGAAGATGAAGAAGTCGATTTAGACGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9SC12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.559

98.883

0.628
  recA Pseudomonas stutzeri DSM 10701

63.873

96.648

0.617
  recA Acinetobacter baumannii D1279779

63.636

95.251

0.606
  recA Ralstonia pseudosolanacearum GMI1000

64.35

92.458

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

92.737

0.584
  recA Helicobacter pylori 26695

61.747

92.737

0.573
  recA Helicobacter pylori strain NCTC11637

61.747

92.737

0.573
  recA Neisseria gonorrhoeae MS11

64.062

89.385

0.573
  recA Neisseria gonorrhoeae MS11

64.062

89.385

0.573
  recA Neisseria gonorrhoeae strain FA1090

64.062

89.385

0.573
  recA Glaesserella parasuis strain SC1401

58.453

97.486

0.57
  recA Streptococcus mitis SK321

57.143

99.721

0.57
  recA Streptococcus pneumoniae D39

58

97.765

0.567
  recA Streptococcus pneumoniae Rx1

58

97.765

0.567
  recA Streptococcus pneumoniae R6

58

97.765

0.567
  recA Streptococcus pneumoniae TIGR4

58

97.765

0.567
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

89.944

0.564
  recA Vibrio cholerae strain A1552

62.733

89.944

0.564
  recA Streptococcus pyogenes NZ131

56.941

98.603

0.561
  recA Streptococcus mitis NCTC 12261

56.62

99.162

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.261

96.369

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

91.62

0.55
  recA Streptococcus mutans UA159

60.494

90.503

0.547
  recA Latilactobacillus sakei subsp. sakei 23K

61.442

89.106

0.547
  recA Lactococcus lactis subsp. cremoris KW2

59.133

90.223

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.402

92.458

0.531