Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HMPREF0389_RS01380 Genome accession   NC_016630
Coordinates   321556..322692 (-) Length   378 a.a.
NCBI ID   WP_014261951.1    Uniprot ID   D6GS00
Organism   Filifactor alocis ATCC 35896     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 316556..327692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0389_RS01355 (HMPREF0389_00361) - 317479..318222 (-) 744 WP_014261946.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  HMPREF0389_RS01360 (HMPREF0389_00360) prmA 318224..319165 (-) 942 WP_014261947.1 50S ribosomal protein L11 methyltransferase -
  HMPREF0389_RS01365 (HMPREF0389_00359) - 319210..319728 (-) 519 WP_014261948.1 peptidylprolyl isomerase -
  HMPREF0389_RS01370 (HMPREF0389_00358) - 319941..320222 (-) 282 WP_014261949.1 HU family DNA-binding protein -
  HMPREF0389_RS01375 (HMPREF0389_00357) - 320564..321538 (-) 975 WP_014261950.1 SAM-dependent methyltransferase -
  HMPREF0389_RS01380 (HMPREF0389_00356) recA 321556..322692 (-) 1137 WP_014261951.1 recombinase RecA Machinery gene
  HMPREF0389_RS01385 (HMPREF0389_00355) asnS 323006..324397 (-) 1392 WP_041250929.1 asparagine--tRNA ligase -
  HMPREF0389_RS01390 (HMPREF0389_00354) - 324416..324664 (-) 249 WP_014261953.1 hypothetical protein -
  HMPREF0389_RS01395 (HMPREF0389_00353) - 324692..326011 (-) 1320 WP_041250743.1 GAF domain-containing SpoIIE family protein phosphatase -
  HMPREF0389_RS01400 (HMPREF0389_00352) - 326035..326799 (-) 765 WP_014261955.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 41353.20 Da        Isoelectric Point: 4.8580

>NTDB_id=43199 HMPREF0389_RS01380 WP_014261951.1 321556..322692(-) (recA) [Filifactor alocis ATCC 35896]
MKSSDKKSKNVDNVDRIGAERKKVLDATISKIERDFGKGAVMMLGDNIDMNIETISTGSLGLDLAIGVGGLPKGRIIEIY
GPESSGKTTVALHAVAEAQKAGGLAAFIDAEHAMDPVYAKALGVDIDNLIISQPDNGEQALEIAESLVKSGVIDILVIDS
VAALVPRSEIEGDMGDSHVGLQARLMSQALRKLTASTNRFKTVIIFINQLREKIGVMFGNPETTTGGRALKFYSTLRLDI
RKFDTIKKNDVVVGNRTRVKVVKNKVAPPFRQAEFDIMYGEGISRAGEIVDIASQYGIIEKAGSWYSYNDMKIGQGRENV
KQFLLDNQEMMEEIEGQVRRTLLKSHVSENDLIEDALSETKVNMDDFSDLDDTVDLNI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=43199 HMPREF0389_RS01380 WP_014261951.1 321556..322692(-) (recA) [Filifactor alocis ATCC 35896]
ATGAAAAGCTCAGATAAAAAAAGTAAAAATGTTGATAATGTAGATCGAATCGGTGCTGAAAGAAAAAAAGTGTTAGATGC
GACTATTTCTAAAATAGAAAGAGATTTTGGAAAAGGTGCTGTAATGATGCTTGGTGACAATATAGATATGAATATCGAGA
CAATTTCAACCGGTTCTCTTGGACTGGATTTAGCAATAGGTGTTGGCGGGCTTCCGAAAGGTAGAATTATAGAAATTTAT
GGTCCGGAATCTTCAGGTAAGACCACAGTTGCACTTCATGCAGTAGCAGAAGCTCAAAAAGCCGGAGGGTTGGCTGCTTT
TATTGATGCAGAACATGCCATGGATCCGGTATATGCAAAGGCGTTAGGGGTAGATATTGACAATTTGATTATTTCCCAAC
CGGATAACGGGGAACAGGCGTTGGAAATAGCAGAATCATTAGTAAAGAGTGGGGTGATTGATATTTTAGTTATAGATTCT
GTTGCAGCATTAGTTCCAAGGTCTGAAATAGAGGGAGATATGGGTGATTCTCATGTTGGTCTTCAAGCTAGATTGATGTC
TCAAGCGTTACGAAAACTAACAGCATCAACAAATCGTTTTAAGACAGTTATTATTTTTATCAATCAACTAAGAGAAAAGA
TAGGAGTTATGTTTGGAAATCCCGAGACAACAACGGGTGGAAGAGCTTTAAAATTCTATTCTACATTAAGGTTGGATATC
AGAAAATTTGATACTATCAAGAAGAACGATGTGGTTGTTGGAAATAGAACAAGAGTAAAAGTTGTAAAAAATAAAGTTGC
GCCTCCATTTAGGCAAGCAGAATTTGACATTATGTATGGAGAAGGAATATCCAGGGCAGGAGAAATTGTTGATATTGCTT
CACAATATGGAATTATAGAGAAAGCAGGTTCTTGGTATTCATATAATGATATGAAAATTGGGCAAGGAAGAGAAAATGTA
AAACAATTTTTATTAGACAACCAAGAAATGATGGAAGAAATTGAAGGGCAAGTCAGAAGAACACTGTTGAAATCTCATGT
TTCTGAAAATGATTTAATAGAAGATGCACTATCTGAAACAAAGGTAAATATGGATGATTTCTCCGATTTGGATGATACTG
TGGATTTGAACATATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D6GS00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

61.725

98.148

0.606
  recA Streptococcus pneumoniae Rx1

59.115

100

0.601
  recA Streptococcus pneumoniae TIGR4

59.115

100

0.601
  recA Streptococcus pneumoniae R6

59.115

100

0.601
  recA Streptococcus pneumoniae D39

59.115

100

0.601
  recA Streptococcus pyogenes NZ131

60.053

100

0.601
  recA Streptococcus mitis SK321

64.897

89.683

0.582
  recA Streptococcus mitis NCTC 12261

64.897

89.683

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

65.465

88.095

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

87.037

0.569
  recA Neisseria gonorrhoeae MS11

64.157

87.831

0.563
  recA Neisseria gonorrhoeae MS11

64.157

87.831

0.563
  recA Neisseria gonorrhoeae strain FA1090

64.157

87.831

0.563
  recA Glaesserella parasuis strain SC1401

56.836

98.677

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

65.421

84.921

0.556
  recA Acinetobacter baumannii D1279779

62.09

88.624

0.55
  recA Lactococcus lactis subsp. cremoris KW2

60.472

89.683

0.542
  recA Acinetobacter baylyi ADP1

63.158

85.45

0.54
  recA Pseudomonas stutzeri DSM 10701

62.229

85.45

0.532
  recA Ralstonia pseudosolanacearum GMI1000

64.63

82.275

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.61

85.45

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

84.921

0.519
  recA Helicobacter pylori 26695

59.633

86.508

0.516
  recA Helicobacter pylori strain NCTC11637

59.633

86.508

0.516
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.443

85.45

0.508
  recA Vibrio cholerae strain A1552

59.443

85.45

0.508

Multiple sequence alignment