Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HB779_RS16815 Genome accession   NZ_CP050301
Coordinates   3079070..3080164 (-) Length   364 a.a.
NCBI ID   WP_188343413.1    Uniprot ID   A0A7G6SFT0
Organism   Phyllobacterium sp. 628     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3074070..3085164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB779_RS16805 (HB779_16815) - 3075298..3075822 (-) 525 WP_188343411.1 hypothetical protein -
  HB779_RS16810 (HB779_16820) alaS 3076174..3078831 (-) 2658 WP_188343412.1 alanine--tRNA ligase -
  HB779_RS16815 (HB779_16825) recA 3079070..3080164 (-) 1095 WP_188343413.1 recombinase RecA Machinery gene
  HB779_RS16820 (HB779_16830) - 3080485..3081435 (+) 951 WP_188343414.1 carbohydrate kinase family protein -
  HB779_RS16825 (HB779_16835) - 3081467..3082396 (+) 930 WP_188343415.1 pseudouridine-5'-phosphate glycosidase -
  HB779_RS16830 (HB779_16840) - 3082389..3083048 (-) 660 WP_188343416.1 OmpA family protein -
  HB779_RS16835 (HB779_16845) - 3083118..3083642 (-) 525 WP_188343417.1 GNAT family N-acetyltransferase -
  HB779_RS16840 (HB779_16850) - 3083965..3084678 (+) 714 WP_188343418.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39164.74 Da        Isoelectric Point: 4.7687

>NTDB_id=431345 HB779_RS16815 WP_188343413.1 3079070..3080164(-) (recA) [Phyllobacterium sp. 628]
MAQNSLRLVEGNSVDKTKALDAALSQIERAFGKGSIMRLGRNEQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPES
SGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
SLKEREEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKVGELVDLGVKAGIVEKSGSWFSYNSQRLGQGRDNAKLFL
KENPEVADEIELVLRQNAGLIAEQMLDKGPDDIEDNDGPEAAEG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=431345 HB779_RS16815 WP_188343413.1 3079070..3080164(-) (recA) [Phyllobacterium sp. 628]
ATGGCTCAAAATTCTTTGCGGTTAGTTGAGGGTAATTCGGTGGATAAAACGAAAGCGCTGGATGCGGCATTGTCCCAGAT
CGAGAGGGCCTTTGGTAAAGGCTCGATCATGCGGCTTGGACGCAACGAGCAGGTAGTGGAGATCGAGACGGTTTCGACCG
GTTCACTTTCACTGGATATAGCCTTGGGCGTCGGCGGGTTGCCGAAGGGCCGTATCGTCGAGATTTATGGGCCGGAAAGT
TCCGGTAAGACAACACTCGCGCTGCATACGATTGCTGAAGCCCAGAAGAAGGGCGGCATTTGCGCTTTCGTTGATGCGGA
ACACGCGCTGGACCCGGTCTATGCTCGCAAGCTTGGTGTGGATCTGGAAAATCTTCTGATCTCGCAGCCTGACACAGGCG
AACAGGCATTGGAAATCACCGACACGCTGGTGCGTTCGGGTGCCATTGATGTTCTTGTTATCGATTCTGTTGCGGCACTG
ACCCCGCGTGCGGAAATCGAAGGCGAGATGGGTGATTCTCTGCCGGGCCTTCAGGCTCGTCTGATGAGCCAGGCGCTGCG
CAAATTGACCGCGTCCATTTCGCGTTCCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATTGGTGTGATGT
TTGGCTCGCCGGAAACCACAACGGGCGGTAATGCGCTGAAATTCTACGCGTCGGTGCGTCTTGATATTCGCCGTATCGGT
TCGCTGAAAGAACGCGAAGAAGTTGTCGGCAACCAGACCCGCGTCAAGGTCGTCAAGAACAAGCTCGCTCCGCCCTTCAA
GCAGGTCGAATTCGACATCATGTATGGCGAAGGCGTATCCAAGGTCGGCGAACTGGTCGATCTCGGCGTAAAGGCTGGGA
TTGTTGAAAAGTCCGGTTCATGGTTCTCCTACAATTCGCAGCGTCTGGGCCAAGGCCGTGACAACGCAAAATTGTTCCTC
AAGGAAAACCCGGAAGTTGCCGATGAGATCGAACTCGTCTTGCGCCAGAATGCTGGTCTTATCGCCGAGCAGATGCTGGA
CAAGGGGCCCGATGACATTGAAGACAATGACGGTCCCGAGGCTGCAGAAGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G6SFT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

68.182

96.703

0.659
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.182

96.703

0.659
  recA Acinetobacter baylyi ADP1

68.786

95.055

0.654
  recA Acinetobacter baumannii D1279779

67.908

95.879

0.651
  recA Neisseria gonorrhoeae strain FA1090

68.103

95.604

0.651
  recA Neisseria gonorrhoeae MS11

68.103

95.604

0.651
  recA Neisseria gonorrhoeae MS11

68.103

95.604

0.651
  recA Ralstonia pseudosolanacearum GMI1000

72.93

86.264

0.629
  recA Glaesserella parasuis strain SC1401

70.625

87.912

0.621
  recA Pseudomonas stutzeri DSM 10701

69.782

88.187

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.602

93.132

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.667

89.835

0.599
  recA Helicobacter pylori 26695

66.564

89.56

0.596
  recA Helicobacter pylori strain NCTC11637

66.258

89.56

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

89.56

0.591
  recA Streptococcus mitis SK321

58.757

97.253

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

62.691

89.835

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.438

87.912

0.558
  recA Streptococcus pneumoniae Rx1

61.145

91.209

0.558
  recA Streptococcus pneumoniae D39

61.145

91.209

0.558
  recA Streptococcus pneumoniae R6

61.145

91.209

0.558
  recA Streptococcus pneumoniae TIGR4

61.145

91.209

0.558
  recA Streptococcus mitis NCTC 12261

60.843

91.209

0.555
  recA Streptococcus mutans UA159

60.18

91.758

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.701

92.033

0.549
  recA Streptococcus pyogenes NZ131

60

90.659

0.544