Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HB776_RS14090 Genome accession   NZ_CP050292
Coordinates   2952742..2953845 (-) Length   367 a.a.
NCBI ID   WP_089265133.1    Uniprot ID   -
Organism   Tardiphaga robiniae strain 581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2947742..2958845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB776_RS14070 (HB776_14105) - 2948358..2949338 (+) 981 WP_175366524.1 ABC transporter permease -
  HB776_RS14075 (HB776_14110) - 2949594..2950532 (+) 939 WP_184518669.1 ABC transporter permease -
  HB776_RS14080 (HB776_14115) - 2950558..2951547 (+) 990 WP_184518672.1 ABC transporter ATP-binding protein -
  HB776_RS14085 (HB776_14120) - 2951544..2952557 (+) 1014 WP_184518676.1 ABC transporter ATP-binding protein -
  HB776_RS14090 (HB776_14125) recA 2952742..2953845 (-) 1104 WP_089265133.1 recombinase RecA Machinery gene
  HB776_RS14095 (HB776_14130) - 2954477..2954890 (+) 414 WP_184518679.1 hypothetical protein -
  HB776_RS14100 (HB776_14135) - 2954965..2955264 (+) 300 WP_184518681.1 hypothetical protein -
  HB776_RS14105 (HB776_14140) - 2955428..2955655 (+) 228 WP_068735728.1 hypothetical protein -
  HB776_RS14110 (HB776_14145) - 2955697..2956134 (-) 438 WP_184518684.1 acyl-CoA thioesterase -
  HB776_RS14115 (HB776_14150) - 2956238..2956555 (-) 318 WP_184518687.1 hypothetical protein -
  HB776_RS14120 (HB776_14155) - 2956850..2957059 (+) 210 WP_184518690.1 DUF6894 family protein -
  HB776_RS14125 (HB776_14160) - 2957149..2957430 (-) 282 WP_089265144.1 hypothetical protein -
  HB776_RS14130 (HB776_14165) - 2957577..2957870 (-) 294 WP_420878655.1 HdeA/HdeB family chaperone -
  HB776_RS14135 (HB776_14170) - 2958098..2958337 (+) 240 WP_184518693.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39170.89 Da        Isoelectric Point: 5.1979

>NTDB_id=431326 HB776_RS14090 WP_089265133.1 2952742..2953845(-) (recA) [Tardiphaga robiniae strain 581]
MATTPTALRIVEGSSMDKTKALSAALSQIERQFGKGSVMKLGKNDRSMDIEVISSGSLGLDIALGVGGLPKGRVIEIYGP
ESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVA
ALVPRAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRR
IGAIKERDEVVGNSTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQGRENSKA
FLKANPDMTAKIEASIRQNSGLIAEQILAGPIERDEDGGDGEEPAED

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=431326 HB776_RS14090 WP_089265133.1 2952742..2953845(-) (recA) [Tardiphaga robiniae strain 581]
ATGGCTACCACTCCGACTGCCCTGCGTATCGTTGAAGGATCCTCCATGGACAAGACCAAGGCCCTGTCGGCCGCGCTCTC
CCAGATCGAGCGCCAGTTCGGCAAGGGCTCGGTGATGAAGCTCGGCAAGAACGACCGGTCGATGGATATCGAGGTGATTT
CGTCGGGCTCGCTCGGCCTCGATATCGCGCTCGGCGTCGGCGGCCTGCCGAAAGGCCGCGTGATCGAGATTTACGGACCG
GAATCCTCGGGCAAGACGACTTTGGCGCTGCACTGCGCCGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCATCGA
CGCCGAACACGCGCTCGATCCGGTCTATGCCCGCAAGCTGGGCGTCAATGTCGATGAGCTCCTGATCTCGCAGCCGGATC
ACGGCGAACAGGCGCTGGAAATCGCCGACACGCTGGTGCGCTCCGGCGCGGTGGACGTGCTGATCATCGACTCCGTGGCG
GCGCTGGTGCCGCGCGCCGAACTCGAAGGCGAAATGGGCGACGCGCTGCCCGGCCTACAGGCTCGCTTGATGAGCCAGGC
GCTGCGCAAGCTGACCGCCTCGATCAACAAATCCAATACGATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTG
TGATGTATGGCTCGCCGGAAACCACCACCGGCGGTAATGCGCTGAAGTTCTACGCTTCGGTCCGTCTCGACATCCGCCGC
ATCGGCGCGATCAAGGAGCGCGACGAGGTCGTTGGTAACTCGACCCGCGTCAAGGTCGTGAAGAACAAGCTGGCGCCTCC
CTTCAAGCAGGTGGAATTCGACATCATGTATGGCGAAGGCGTCTCCAAGATGGGCGAAATCCTCGATCTCGGCGTCAAGG
CCGGCATCGTCGAGAAGTCCGGCGCCTGGTTCTCCTATGACAGCCAGCGTCTCGGCCAGGGTCGCGAGAATTCCAAGGCC
TTCCTGAAAGCCAATCCGGACATGACCGCCAAGATCGAAGCCTCGATCCGGCAGAATTCCGGCCTGATCGCCGAGCAGAT
TCTCGCTGGTCCCATCGAGCGCGACGAAGACGGCGGTGACGGCGAGGAGCCGGCAGAAGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

67.847

92.371

0.627
  recA Ralstonia pseudosolanacearum GMI1000

69.909

89.646

0.627
  recA Neisseria gonorrhoeae strain FA1090

65.341

95.913

0.627
  recA Neisseria gonorrhoeae MS11

65.341

95.913

0.627
  recA Neisseria gonorrhoeae MS11

65.341

95.913

0.627
  recA Glaesserella parasuis strain SC1401

65.714

95.368

0.627
  recA Vibrio cholerae strain A1552

67.164

91.281

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.164

91.281

0.613
  recA Acinetobacter baylyi ADP1

68.012

87.738

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.361

89.101

0.591
  recA Acinetobacter baumannii D1279779

67.391

87.738

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

88.828

0.589
  recA Helicobacter pylori strain NCTC11637

62.974

93.46

0.589
  recA Streptococcus mitis SK321

58.221

100

0.589
  recA Helicobacter pylori 26695

62.682

93.46

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.939

89.373

0.58
  recA Streptococcus mitis NCTC 12261

60.057

94.823

0.569
  recA Streptococcus pneumoniae R6

59.483

94.823

0.564
  recA Streptococcus pneumoniae TIGR4

59.483

94.823

0.564
  recA Streptococcus pneumoniae Rx1

59.483

94.823

0.564
  recA Streptococcus pneumoniae D39

59.483

94.823

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

59.357

93.188

0.553
  recA Streptococcus mutans UA159

60.06

90.736

0.545
  recA Streptococcus pyogenes NZ131

60.486

89.646

0.542
  recA Lactococcus lactis subsp. cremoris KW2

59.819

90.191

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

86.376

0.537