Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HB752_RS09745 Genome accession   NZ_CP050271
Coordinates   1985392..1986543 (+) Length   383 a.a.
NCBI ID   WP_002288707.1    Uniprot ID   -
Organism   Streptococcus mutans strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1980392..1991543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB752_RS09725 (HB752_09725) mutL 1980572..1982527 (+) 1956 WP_019804939.1 DNA mismatch repair endonuclease MutL -
  HB752_RS09730 (HB752_09730) ruvA 1982712..1983305 (+) 594 WP_002262395.1 Holliday junction branch migration protein RuvA -
  HB752_RS09735 (HB752_09735) - 1983387..1983947 (+) 561 WP_002271569.1 DNA-3-methyladenine glycosylase I -
  HB752_RS09740 (HB752_09740) cinA 1984096..1985352 (+) 1257 WP_002266115.1 competence/damage-inducible protein A Machinery gene
  HB752_RS09745 (HB752_09745) recA 1985392..1986543 (+) 1152 WP_002288707.1 recombinase RecA Machinery gene
  HB752_RS09750 (HB752_09750) spx 1986628..1987026 (+) 399 WP_002262391.1 transcriptional regulator Spx -
  HB752_RS09755 (HB752_09755) - 1987277..1987702 (+) 426 WP_002271571.1 hypothetical protein -
  HB752_RS09760 (HB752_09760) - 1987831..1988043 (+) 213 Protein_1880 hypothetical protein -
  HB752_RS09765 (HB752_09765) brsM 1988034..1988480 (-) 447 WP_002262388.1 bacteriocin genes regulator BrsM Regulator
  HB752_RS09770 (HB752_09770) brsR 1988493..1988927 (-) 435 WP_002266979.1 bacteriocin genes transcriptional regulator BrsR Regulator
  HB752_RS09775 (HB752_09775) - 1989095..1989364 (+) 270 WP_002262386.1 IreB family regulatory phosphoprotein -
  HB752_RS09780 (HB752_09780) ruvX 1989361..1989780 (+) 420 WP_002262385.1 Holliday junction resolvase RuvX -
  HB752_RS09785 (HB752_09785) - 1989861..1990160 (+) 300 WP_002262384.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41433.09 Da        Isoelectric Point: 5.1601

>NTDB_id=431151 HB752_RS09745 WP_002288707.1 1985392..1986543(+) (recA) [Streptococcus mutans strain S1]
MAKRIKKTEEITKKFGDERKKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIVEIYGP
ESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKAGAWYSYNGEKIGQGSE
NAKKFLADNPEIFDDIDHKVRVQYGLIEEDNTKEKQTSKEKETDEKADKNLVLELDDTIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=431151 HB752_RS09745 WP_002288707.1 1985392..1986543(+) (recA) [Streptococcus mutans strain S1]
TTGGCCAAAAGAATAAAAAAGACAGAAGAAATAACGAAAAAATTTGGTGATGAGCGTAAGAAAGCTCTTGATGATGCTTT
GAAAAACATCGAAAAAGATTTTGGTAAAGGTGCAGTTATGCGTCTGGGTGAGCGCGCTGAACAAAAGGTTCAGGTGATGA
GTTCAGGAAGTCTGGCTCTTGATATTGCTCTTGGGGCAGGCGGTTATCCAAAAGGGCGTATCGTTGAGATTTACGGGCCA
GAATCTTCTGGTAAGACAACTGTCGCTCTTCATGCTGTTGCTCAGGCGCAAAAAGATGGCGGTATTGCCGCTTTCATTGA
TGCAGAACATGCCCTTGATCCAGCCTATGCTGCTGCTCTTGGCGTTAATATTGATGAGCTTTTGCTTTCACAACCAGATT
CAGGAGAACAGGGTCTTGAAATTGCAGGGAAATTGATTGATTCTGGCGCTGTTGATTTAGTTGTTGTTGACTCAGTGGCA
GCTTTAGTACCACGTGCGGAGATTGACGGAGATATTGGTGATAGTCATGTTGGCTTACAAGCACGCATGATGAGTCAAGC
GATGCGTAAATTATCAGCTTCAATCAATAAAACAAAAACCATTGCTATTTTTATTAATCAATTGCGGGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACCCCTGGCGGGCGTGCCTTGAAGTTTTATTCTTCTGTGCGTCTTGATGTCCGTGGC
AATACTCAAATTAAAGGAACCGGGGAACAAAAAGACAGCAATATTGGTAAAGAGACCAAAATTAAAGTTGTTAAAAATAA
AGTTGCTCCACCATTTAAGGAAGCTTTTGTAGAAATTATATATGGTGAAGGCATTTCTCGTACAGGTGAATTAGTTAAGA
TTGCCAGTGATTTGGGAATTATCCAAAAAGCTGGAGCTTGGTACTCTTATAATGGTGAAAAAATTGGGCAAGGTTCTGAA
AATGCTAAAAAATTCCTAGCTGATAATCCAGAAATTTTTGATGACATCGATCATAAAGTGCGTGTTCAATATGGTTTAAT
TGAGGAAGATAATACTAAAGAAAAACAGACTTCTAAAGAAAAAGAAACTGATGAGAAAGCTGACAAAAACCTTGTTTTAG
AGCTGGATGATACAATTGAGCTTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

99.478

100

0.995
  recA Streptococcus pyogenes NZ131

86.945

100

0.869
  recA Streptococcus mitis NCTC 12261

84.293

99.739

0.841
  recA Streptococcus mitis SK321

83.77

99.739

0.836
  recA Streptococcus pneumoniae R6

82.857

100

0.833
  recA Streptococcus pneumoniae Rx1

82.857

100

0.833
  recA Streptococcus pneumoniae D39

82.857

100

0.833
  recA Streptococcus pneumoniae TIGR4

82.857

100

0.833
  recA Lactococcus lactis subsp. cremoris KW2

76.657

90.601

0.695
  recA Latilactobacillus sakei subsp. sakei 23K

70

86.162

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

85.901

0.587
  recA Acinetobacter baylyi ADP1

59.659

91.906

0.548
  recA Neisseria gonorrhoeae MS11

62.538

86.423

0.54
  recA Neisseria gonorrhoeae MS11

62.538

86.423

0.54
  recA Neisseria gonorrhoeae strain FA1090

62.538

86.423

0.54
  recA Acinetobacter baumannii D1279779

59.312

91.123

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.411

89.034

0.538
  recA Glaesserella parasuis strain SC1401

60.294

88.773

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

84.334

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.856

0.52
  recA Vibrio cholerae strain A1552

61.231

84.856

0.52
  recA Pseudomonas stutzeri DSM 10701

58.16

87.99

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

86.423

0.499
  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.768

0.493
  recA Helicobacter pylori strain NCTC11637

56.287

87.206

0.491
  recA Helicobacter pylori 26695

56.287

87.206

0.491