Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G9473_RS03305 Genome accession   NZ_CP050265
Coordinates   683800..684864 (+) Length   354 a.a.
NCBI ID   WP_291135981.1    Uniprot ID   A0A6G9N8E6
Organism   MAG: Erythrobacter sp. isolate NP_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 678800..689864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9473_RS03290 (G9473_03270) smpB 679828..680310 (+) 483 WP_291135979.1 SsrA-binding protein SmpB -
  G9473_RS03295 (G9473_03275) - 680563..681096 (+) 534 WP_291138187.1 DUF2062 domain-containing protein -
  G9473_RS03300 (G9473_03280) - 681224..683659 (+) 2436 WP_291138190.1 response regulator -
  G9473_RS03305 (G9473_03285) recA 683800..684864 (+) 1065 WP_291135981.1 recombinase RecA Machinery gene
  G9473_RS03310 (G9473_03290) alaS 685080..687737 (+) 2658 WP_291135983.1 alanine--tRNA ligase -
  G9473_RS03315 (G9473_03295) - 687760..687939 (-) 180 WP_291135985.1 hypothetical protein -
  G9473_RS03320 (G9473_03300) - 688017..689816 (-) 1800 WP_291135987.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38178.68 Da        Isoelectric Point: 4.9989

>NTDB_id=430978 G9473_RS03305 WP_291135981.1 683800..684864(+) (recA) [MAG: Erythrobacter sp. isolate NP_1]
MATQLKLVEKEKDVDRQKALDAALAQIDRAFGKGSAMKLGQKEAMQVEAISTGSLGLDIALGVGGLPKGRVIEVYGPESS
GKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELVVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDEVIGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWFSYDSIRIGQGRENAKTYLK
ENPEVCERLEAAIRGKTDEVAEEMMTGPEPDSED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=430978 G9473_RS03305 WP_291135981.1 683800..684864(+) (recA) [MAG: Erythrobacter sp. isolate NP_1]
ATGGCTACCCAATTGAAACTGGTAGAGAAGGAAAAGGACGTGGATCGCCAGAAGGCTCTCGACGCAGCGCTTGCCCAGAT
CGACCGGGCATTCGGCAAGGGTTCGGCGATGAAGCTGGGCCAGAAGGAAGCGATGCAGGTGGAGGCGATCTCCACCGGCT
CGCTCGGGCTCGACATCGCGCTGGGCGTGGGCGGGTTGCCCAAGGGCCGGGTGATCGAGGTCTACGGCCCGGAAAGCTCA
GGGAAAACGACGCTTGCGCTGCACGTCATTGCCGAAGCGCAGAAGGCGGGCGGGACCGCGGCCTTCGTCGATGCCGAACA
CGCGCTCGACCCGGTCTATGCGAAGAAGCTCGGCGTGGATATCGACGAACTGGTCGTCTCGCAGCCCGACACCGGCGAAC
AGGCGCTGGAAATCACCGATACGCTGGTGCGCTCGAACGCGATCGACGTGCTGGTGGTCGATTCTGTCGCCGCGCTCGTG
CCGCGGGCCGAGATCGAGGGCGAGATGGGCGATTCGCACGTCGGCCTGCAGGCGCGCCTCATGTCGCAGTCGCTGCGCAA
GCTGACGGGCTCGATCAACCGGTCGAAGTGCATGGTGATCTTCATCAACCAGCTGCGGATGAAGATTGGCGTGATGTACG
GCAATCCTGAGACGACGACGGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTCCGCCTCGACATCCGCCGCACCGGGCAG
ATCAAGGACCGCGACGAGGTTATCGGCAATTCGACCCGCGTGAAAGTGGTCAAGAACAAGGTTGCCCCGCCTTTCAAGCA
GGTCGAATTCGACATCATGTACGGCGAGGGCATCTCCAAGATCGGCGAGATCCTCGACCTCGGCGTGAAGGCGGGCATCG
TCGAGAAGTCGGGCAGCTGGTTCTCCTATGACAGCATCCGCATCGGCCAGGGCCGCGAGAACGCCAAGACCTATCTCAAG
GAGAACCCCGAGGTGTGCGAACGGCTCGAGGCGGCGATCCGCGGCAAGACCGACGAGGTCGCCGAAGAGATGATGACCGG
GCCGGAGCCCGATTCCGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9N8E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

65.625

99.435

0.653
  recA Vibrio cholerae strain A1552

68.249

95.198

0.65
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.249

95.198

0.65
  recA Pseudomonas stutzeri DSM 10701

70.37

91.525

0.644
  recA Acinetobacter baylyi ADP1

65.698

97.175

0.638
  recA Neisseria gonorrhoeae MS11

69.47

90.678

0.63
  recA Neisseria gonorrhoeae strain FA1090

69.47

90.678

0.63
  recA Neisseria gonorrhoeae MS11

69.47

90.678

0.63
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.683

92.655

0.627
  recA Bacillus subtilis subsp. subtilis str. 168

68.75

90.395

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.412

96.045

0.619
  recA Acinetobacter baumannii D1279779

67.702

90.96

0.616
  recA Helicobacter pylori strain NCTC11637

63.529

96.045

0.61
  recA Helicobacter pylori 26695

63.235

96.045

0.607
  recA Ralstonia pseudosolanacearum GMI1000

69.481

87.006

0.605
  recA Latilactobacillus sakei subsp. sakei 23K

62.573

96.61

0.605
  recA Streptococcus pyogenes NZ131

60.933

96.893

0.59
  recA Streptococcus pneumoniae D39

61.424

95.198

0.585
  recA Streptococcus pneumoniae Rx1

61.424

95.198

0.585
  recA Streptococcus pneumoniae R6

61.424

95.198

0.585
  recA Streptococcus pneumoniae TIGR4

61.424

95.198

0.585
  recA Streptococcus mitis SK321

61.493

94.633

0.582
  recA Streptococcus mitis NCTC 12261

61.194

94.633

0.579
  recA Lactococcus lactis subsp. cremoris KW2

59.357

96.61

0.573
  recA Streptococcus mutans UA159

59.531

96.328

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

91.808

0.565