Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IPMB12_RS08055 Genome accession   NZ_CP050253
Coordinates   1767068..1768102 (+) Length   344 a.a.
NCBI ID   WP_166916649.1    Uniprot ID   A0A6G9ICU6
Organism   Zophobihabitans entericus strain IPMB12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1762068..1773102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPMB12_RS08045 (IPMB12_08045) - 1762148..1763605 (-) 1458 WP_166916645.1 aminotransferase class V-fold PLP-dependent enzyme -
  IPMB12_RS08050 (IPMB12_08050) - 1763927..1766536 (-) 2610 WP_166916647.1 autotransporter outer membrane beta-barrel domain-containing protein -
  IPMB12_RS08055 (IPMB12_08055) recA 1767068..1768102 (+) 1035 WP_166916649.1 recombinase RecA Machinery gene
  IPMB12_RS08060 (IPMB12_08060) - 1768111..1768650 (+) 540 WP_166916651.1 regulatory protein RecX -
  IPMB12_RS08065 (IPMB12_08065) alaS 1768983..1771613 (+) 2631 WP_166917744.1 alanine--tRNA ligase -
  IPMB12_RS08070 (IPMB12_08070) csrA 1771640..1771840 (+) 201 WP_166916653.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37034.30 Da        Isoelectric Point: 5.0393

>NTDB_id=430805 IPMB12_RS08055 WP_166916649.1 1767068..1768102(+) (recA) [Zophobihabitans entericus strain IPMB12]
MNENKQRALSAALSQIEKQFGKGSIMRLGDTQTLDVDKISTGSLGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIA
QAQKQGKTCAFIDAEHALDPIYAAKLGVQVDDLLVSQPDTGEQALEICDALVRSGAVDVVIVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKLTANIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGEDVIGSD
TRVKVVKNKVAAPFRQAEFQILYGCGISKEGELIDLGVKHKLVDKAGAWYSYNGEKIGQGKANSMKYIQEHPEVSAELEE
KLRELLLNSPAHFAEEDASESSED

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=430805 IPMB12_RS08055 WP_166916649.1 1767068..1768102(+) (recA) [Zophobihabitans entericus strain IPMB12]
ATGAACGAGAACAAACAACGCGCTTTATCAGCTGCATTAAGTCAAATTGAAAAACAATTCGGTAAAGGCTCTATCATGCG
TTTAGGGGATACCCAGACTCTTGATGTAGATAAGATTTCTACAGGCTCTTTAGGATTAGATATTGCACTTGGCATTGGTG
GTTTACCAATGGGACGTATTGTTGAAATCTTCGGGCCTGAATCTTCAGGTAAAACGACATTAACATTATCGGTTATTGCT
CAGGCGCAAAAACAAGGTAAAACTTGTGCATTTATCGATGCGGAGCATGCATTAGATCCTATCTATGCTGCTAAATTAGG
TGTTCAGGTTGATGACTTACTGGTTTCACAACCAGATACTGGTGAACAGGCGCTGGAAATCTGTGATGCATTAGTTCGTT
CTGGTGCGGTTGATGTGGTGATTGTTGACTCCGTGGCAGCTTTAACACCAAGAGCAGAAATTGAAGGTGAAATGGGTGAT
TCTCATATGGGATTACAAGCTCGTTTGATGTCTCAGGCTCTGCGTAAACTAACCGCCAATATTAAAAATGCTAACTGTTT
AGTTGTATTTATCAACCAGATTCGTATGAAAATTGGTGTCATGTTTGGTAACCCGGAAACAACAACGGGTGGTAATGCTT
TAAAATTCTATGCTTCTGTACGTCTTGATATTCGCCGTATTGGTTCAGTGAAAGAGGGTGAGGATGTCATTGGTAGTGAC
ACTCGTGTTAAAGTCGTAAAAAACAAAGTCGCTGCTCCATTCAGACAAGCTGAATTCCAGATTCTGTATGGTTGTGGTAT
CTCTAAAGAAGGCGAATTAATTGATTTAGGTGTTAAACATAAATTAGTTGATAAAGCGGGTGCTTGGTACAGCTACAATG
GCGAAAAAATTGGTCAGGGTAAAGCAAATTCAATGAAATATATTCAGGAGCATCCGGAAGTTTCTGCTGAACTGGAAGAG
AAACTACGTGAGCTTTTATTAAATAGTCCTGCTCATTTTGCTGAAGAAGATGCTTCAGAGAGTAGTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9ICU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.291

100

0.753
  recA Vibrio cholerae strain A1552

78.659

95.349

0.75
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.659

95.349

0.75
  recA Glaesserella parasuis strain SC1401

73.099

99.419

0.727
  recA Acinetobacter baylyi ADP1

71.304

100

0.715
  recA Acinetobacter baumannii D1279779

70.058

100

0.701
  recA Neisseria gonorrhoeae MS11

72.086

94.767

0.683
  recA Neisseria gonorrhoeae MS11

72.086

94.767

0.683
  recA Neisseria gonorrhoeae strain FA1090

72.086

94.767

0.683
  recA Ralstonia pseudosolanacearum GMI1000

72.698

91.57

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.198

94.186

0.605
  recA Helicobacter pylori 26695

63.692

94.477

0.602
  recA Helicobacter pylori strain NCTC11637

63.385

94.477

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

96.221

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

93.314

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.305

93.314

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

93.314

0.578
  recA Streptococcus pneumoniae R6

61.3

93.895

0.576
  recA Streptococcus pneumoniae TIGR4

61.3

93.895

0.576
  recA Streptococcus pneumoniae D39

61.3

93.895

0.576
  recA Streptococcus pneumoniae Rx1

61.3

93.895

0.576
  recA Streptococcus mitis SK321

60.991

93.895

0.573
  recA Streptococcus mitis NCTC 12261

60.372

93.895

0.567
  recA Streptococcus mutans UA159

59.633

95.058

0.567
  recA Streptococcus pyogenes NZ131

59.327

95.058

0.564
  recA Lactococcus lactis subsp. cremoris KW2

57.276

93.895

0.538