Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HBA47_RS01805 Genome accession   NZ_CP050136
Coordinates   350325..351434 (-) Length   369 a.a.
NCBI ID   WP_003789345.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 345325..356434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS01790 (HBA47_01795) - 346314..346616 (-) 303 WP_003789339.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  HBA47_RS01795 (HBA47_01800) - 346786..347730 (+) 945 WP_019390289.1 branched-chain amino acid transaminase -
  HBA47_RS01800 (HBA47_01805) dnaK 348030..349955 (-) 1926 WP_019390290.1 molecular chaperone DnaK -
  HBA47_RS01805 (HBA47_01810) recA 350325..351434 (-) 1110 WP_003789345.1 recombinase RecA Machinery gene
  HBA47_RS01810 (HBA47_01815) - 351585..351791 (-) 207 WP_003785358.1 bacterioferritin-associated ferredoxin -
  HBA47_RS01815 (HBA47_01820) - 351963..354173 (+) 2211 WP_154700112.1 UvrD-helicase domain-containing protein -
  HBA47_RS01820 (HBA47_01825) carA 354408..355538 (+) 1131 WP_019390293.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  HBA47_RS01825 (HBA47_01830) - 355606..355992 (+) 387 Protein_345 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39661.84 Da        Isoelectric Point: 4.6846

>NTDB_id=430283 HBA47_RS01805 WP_003789345.1 350325..351434(-) (recA) [Kingella kingae strain ATCC 23332]
MAEKKSSKDKVSVNRPTTEAERATALQAALAQIEKNYGKGAVMKMDGSHQDEELQVISTGSLTLDIALGVGGLPRGRIVE
IYGAESSGKTTLCLESIAQCQKAGGTCAFIDAEHAFDPIYARKLGVEVEKLLVSQPDTGEQALEICDMLVRSGGVDMVVI
DSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLAGHIKKTNTLAVFINQTRMKIGVSYGNPETTTGGNALKFYASVRL
NISGTTKIEKNGEAIGKETKVKVVKNKVAPPFRMAEFDILYGEGISWEGELIDLGADLDVINKSGSWFSYEGNKIGQGKD
NVRQWLKDNPEIANEIAAKIRELVSDNPSAIESISADDDDDAPDFSDDE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=430283 HBA47_RS01805 WP_003789345.1 350325..351434(-) (recA) [Kingella kingae strain ATCC 23332]
ATGGCAGAAAAAAAATCCAGCAAAGACAAAGTATCCGTAAACCGCCCCACCACCGAAGCCGAACGCGCCACCGCATTGCA
GGCTGCTTTGGCACAAATTGAGAAAAACTACGGCAAAGGCGCAGTCATGAAAATGGACGGTAGCCACCAAGACGAAGAAT
TGCAAGTCATTTCCACAGGTTCGCTCACATTGGACATTGCCTTGGGTGTGGGCGGTTTACCACGCGGTCGTATTGTGGAA
ATTTACGGCGCAGAATCATCGGGCAAAACCACTTTATGTTTGGAATCGATTGCACAATGCCAAAAAGCAGGCGGAACGTG
TGCGTTTATTGACGCAGAACACGCATTTGACCCTATTTACGCGCGTAAATTGGGCGTAGAAGTCGAAAAATTGTTGGTAT
CGCAACCCGACACAGGCGAACAAGCATTGGAAATTTGCGATATGTTGGTGCGCTCGGGTGGTGTGGATATGGTCGTGATT
GATTCGGTTGCCGCGCTTGTTCCCAAAGCGGAAATTGAAGGCGACATGGGTGATAGCCACGTTGGTTTGCACGCTCGTTT
GATGAGCCAAGCCTTGCGTAAACTGGCAGGACACATCAAAAAAACCAACACGCTGGCGGTGTTCATCAACCAAACGCGCA
TGAAAATTGGCGTGAGCTATGGCAATCCAGAAACCACAACAGGCGGCAACGCGTTGAAATTCTATGCGTCTGTGCGATTG
AATATTTCTGGCACAACCAAAATCGAGAAAAATGGCGAAGCGATTGGTAAAGAAACCAAAGTCAAAGTGGTTAAAAACAA
AGTTGCGCCACCGTTCCGCATGGCTGAATTCGACATTTTGTATGGCGAAGGCATTAGCTGGGAGGGCGAATTGATTGATT
TGGGCGCAGATTTGGACGTGATTAACAAATCGGGTTCGTGGTTTAGCTACGAGGGCAACAAAATCGGTCAAGGCAAAGAC
AACGTGCGCCAATGGTTGAAAGATAACCCTGAAATCGCCAACGAAATTGCGGCAAAAATCCGCGAATTGGTGAGCGACAA
TCCATCGGCTATCGAAAGCATTTCGGCTGACGATGATGACGATGCGCCTGATTTTAGCGATGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

76.276

90.244

0.688
  recA Neisseria gonorrhoeae strain FA1090

76.276

90.244

0.688
  recA Neisseria gonorrhoeae MS11

76.276

90.244

0.688
  recA Glaesserella parasuis strain SC1401

62.634

100

0.631
  recA Ralstonia pseudosolanacearum GMI1000

66.869

89.16

0.596
  recA Acinetobacter baylyi ADP1

63.953

93.225

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.667

88.618

0.591
  recA Pseudomonas stutzeri DSM 10701

68.454

85.908

0.588
  recA Acinetobacter baumannii D1279779

62.428

93.767

0.585
  recA Vibrio cholerae strain A1552

62.573

92.683

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.573

92.683

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.243

91.599

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

63.777

87.534

0.558
  recA Streptococcus mitis NCTC 12261

59.42

93.496

0.556
  recA Streptococcus mitis SK321

59.13

93.496

0.553
  recA Streptococcus pyogenes NZ131

62.462

88.076

0.55
  recA Helicobacter pylori strain NCTC11637

61.89

88.889

0.55
  recA Helicobacter pylori 26695

61.89

88.889

0.55
  recA Streptococcus mutans UA159

62.154

88.076

0.547
  recA Latilactobacillus sakei subsp. sakei 23K

57.714

94.851

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.929

91.057

0.537
  recA Streptococcus pneumoniae R6

60.736

88.347

0.537
  recA Streptococcus pneumoniae TIGR4

60.736

88.347

0.537
  recA Streptococcus pneumoniae D39

60.736

88.347

0.537
  recA Streptococcus pneumoniae Rx1

60.736

88.347

0.537
  recA Lactococcus lactis subsp. cremoris KW2

60.123

88.347

0.531