Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   HBA50_RS00685 Genome accession   NZ_CP050133
Coordinates   134033..135181 (+) Length   382 a.a.
NCBI ID   WP_045500211.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 129033..140181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS00655 (HBA50_00655) ruvA 129539..130129 (+) 591 WP_045500192.1 Holliday junction branch migration protein RuvA -
  HBA50_RS00660 (HBA50_00660) - 130139..130693 (+) 555 WP_045500195.1 DNA-3-methyladenine glycosylase I -
  HBA50_RS00665 (HBA50_00665) - 130698..131351 (+) 654 WP_045500198.1 CPBP family intramembrane glutamic endopeptidase -
  HBA50_RS00670 (HBA50_00670) - 131435..131992 (+) 558 WP_045500201.1 GNAT family N-acetyltransferase -
  HBA50_RS00675 (HBA50_00675) - 132036..132446 (-) 411 WP_045500205.1 helix-turn-helix domain-containing protein -
  HBA50_RS00680 (HBA50_00680) - 132717..133974 (+) 1258 Protein_132 competence/damage-inducible protein A -
  HBA50_RS00685 (HBA50_00685) recA 134033..135181 (+) 1149 WP_045500211.1 recombinase RecA Machinery gene
  HBA50_RS00690 (HBA50_00690) spx 135267..135665 (+) 399 WP_005591493.1 transcriptional regulator Spx -
  HBA50_RS00695 (HBA50_00695) - 135773..136339 (+) 567 WP_005591494.1 SP0191 family lipoprotein -
  HBA50_RS00700 (HBA50_00700) - 136383..136940 (+) 558 WP_045500214.1 SP0191 family lipoprotein -
  HBA50_RS00705 (HBA50_00705) - 137108..137374 (+) 267 WP_005592119.1 IreB family regulatory phosphoprotein -
  HBA50_RS00710 (HBA50_00710) ruvX 137374..137793 (+) 420 WP_005591497.1 Holliday junction resolvase RuvX -
  HBA50_RS00715 (HBA50_00715) - 137814..138125 (+) 312 WP_005591498.1 DUF1292 domain-containing protein -
  HBA50_RS00720 (HBA50_00720) - 138398..139630 (+) 1233 WP_045500217.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 41274.95 Da        Isoelectric Point: 4.8483

>NTDB_id=430184 HBA50_RS00685 WP_045500211.1 134033..135181(+) (recA) [Streptococcus cristatus ATCC 51100]
MAKKQKNLDEITKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDAKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKIGQGSE
NAKKYLTDHPEVFDEIDRQVRVRYGLIEDDEPAEAVKGKAEAPLEKLEEVTLDLDDAFDIEE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=430184 HBA50_RS00685 WP_045500211.1 134033..135181(+) (recA) [Streptococcus cristatus ATCC 51100]
ATGGCAAAAAAACAGAAAAATTTGGATGAAATCACAAAGAAATTTGGAGATGAACGCCAAAAAGCTTTGGATAACGCTCT
GAAGAATATTGAAAAAGACTTCGGTAAGGGAGCTATTATGCGTCTGGGCGAGCGAGCGGAGCAAAAGGTTCAAGTCATGA
GTTCAGGCTCTCTGGCTTTGGATATTGCTCTCGGTGCGGGTGGCTATCCTAAGGGACGGATTATTGAGATTTACGGTCCA
GAGTCTTCTGGTAAGACAACCGTTGCTCTTCATGCCGTTGCTCAGGCTCAAAAAGAAGGCGGCATCGCAGCCTTTATTGA
TGCAGAGCACGCTTTGGACCCGTCATACGCTGCAGCTTTGGGCGTAAACATTGATGAATTGCTGCTGTCACAACCAGACT
CAGGGGAGCAAGGTCTTGAAATTGCAGGAAAATTGATTGACTCTGGTGCAGTTGATTTGGTCGTTATCGACTCAGTTGCA
GCCCTGGTGCCACGTGCAGAAATCGATGGCGATATCGGTGACAGCCACGTCGGCTTGCAGGCTCGGATGATGAGCCAGGC
GATGCGCAAATTGTCTGCTTCTATCAACAAAACCAAGACGATTGCCATCTTTATCAACCAACTTCGTGAAAAAGTTGGTG
TTATGTTTGGAAATCCTGAAACAACACCAGGTGGACGTGCTTTGAAGTTCTACGCATCTGTTCGTCTGGATGTCCGTGGC
AATACCCAAATCAAGGGTACGGGTGATGCGAAGGATACCAATGTCGGTAAGGAAACTAAAATCAAGGTTGTGAAAAACAA
GGTGGCTCCACCATTCAAGGAAGCCTTTGTGGAAATCATGTATGGAGAAGGTATTTCTAAGACAGGCGAGCTGATTAAGA
TTGCGACTGACTTGGATATCATCAAAAAAGCGGGTGCTTGGTATTCTTACAATGATGAAAAAATCGGCCAAGGTTCTGAA
AATGCGAAGAAATACTTGACTGATCATCCAGAAGTCTTTGACGAAATCGACCGTCAAGTCCGTGTACGTTACGGCTTGAT
TGAAGATGATGAGCCAGCAGAAGCAGTGAAGGGTAAGGCTGAGGCTCCTCTTGAAAAATTAGAAGAAGTGACTCTTGATC
TAGACGATGCCTTTGATATTGAGGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

88.714

99.738

0.885

  recA Streptococcus mitis SK321

88.451

99.738

0.882

  recA Streptococcus pneumoniae R6

86.494

100

0.872

  recA Streptococcus pneumoniae TIGR4

86.494

100

0.872

  recA Streptococcus pneumoniae D39

86.494

100

0.872

  recA Streptococcus pneumoniae Rx1

86.494

100

0.872

  recA Streptococcus pyogenes NZ131

85.34

100

0.853

  recA Streptococcus mutans UA159

84.856

100

0.851

  recA Lactococcus lactis subsp. cremoris KW2

78.693

92.147

0.725

  recA Latilactobacillus sakei subsp. sakei 23K

66.482

94.503

0.628

  recA Bacillus subtilis subsp. subtilis str. 168

69.605

86.126

0.599

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.467

84.555

0.537

  recA Neisseria gonorrhoeae MS11

61.329

86.649

0.531

  recA Neisseria gonorrhoeae strain FA1090

61.329

86.649

0.531

  recA Neisseria gonorrhoeae MS11

61.329

86.649

0.531

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

86.126

0.529

  recA Vibrio cholerae strain A1552

61.846

85.079

0.526

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.846

85.079

0.526

  recA Acinetobacter baumannii D1279779

61.231

85.079

0.521

  recA Glaesserella parasuis strain SC1401

58.702

88.743

0.521

  recA Acinetobacter baylyi ADP1

60.615

85.079

0.516

  recA Helicobacter pylori 26695

55.807

92.408

0.516

  recA Helicobacter pylori strain NCTC11637

55.807

92.408

0.516

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.101

90.314

0.516

  recA Ralstonia pseudosolanacearum GMI1000

59.937

82.984

0.497

  recA Pseudomonas stutzeri DSM 10701

58.104

85.602

0.497