Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HAV23_RS01370 Genome accession   NZ_CP050116
Coordinates   247504..248595 (+) Length   363 a.a.
NCBI ID   WP_010888966.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BNK-50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 242504..253595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV23_RS01345 (HAV23_01345) - 243156..243836 (-) 681 WP_010888961.1 DsbA family protein -
  HAV23_RS01350 (HAV23_01350) - 243995..244957 (-) 963 WP_010888962.1 potassium channel protein -
  HAV23_RS01355 (HAV23_01355) - 244954..245451 (-) 498 WP_010888963.1 hypothetical protein -
  HAV23_RS01360 (HAV23_01360) - 245592..246806 (+) 1215 WP_010888964.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  HAV23_RS01365 (HAV23_01365) thpR 246803..247507 (+) 705 WP_010888965.1 RNA 2',3'-cyclic phosphodiesterase -
  HAV23_RS01370 (HAV23_01370) recA 247504..248595 (+) 1092 WP_010888966.1 recombinase RecA Machinery gene
  HAV23_RS01375 (HAV23_01375) - 248777..249697 (-) 921 WP_028328034.1 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor -
  HAV23_RS01380 (HAV23_01380) - 249804..250199 (+) 396 WP_027480080.1 transcriptional repressor -
  HAV23_RS01385 (HAV23_01385) - 250249..250911 (+) 663 WP_010888968.1 hypothetical protein -
  HAV23_RS01390 (HAV23_01390) - 251161..251766 (+) 606 WP_051618856.1 MarC family protein -
  HAV23_RS01395 (HAV23_01395) - 251822..252304 (-) 483 WP_034350554.1 hypothetical protein -
  HAV23_RS01400 (HAV23_01400) - 252489..253406 (-) 918 WP_010888971.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38144.76 Da        Isoelectric Point: 5.1867

>NTDB_id=430054 HAV23_RS01370 WP_010888966.1 247504..248595(+) (recA) [Deinococcus radiodurans strain BNK-50]
MSKDATKEISAPTDAKERSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPE
SGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAA
LTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKI
GQPTKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIA
YIAERPEMEQEIRDRVMAAIRAGNAGEAPALAPAPAAPEAAEA

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=430054 HAV23_RS01370 WP_010888966.1 247504..248595(+) (recA) [Deinococcus radiodurans strain BNK-50]
ATGAGCAAGGACGCCACCAAAGAAATCTCCGCCCCCACCGACGCCAAGGAACGCAGCAAGGCCATCGAAACAGCCATGAG
CCAGATCGAAAAGGCCTTCGGCAAGGGCTCGATCATGAAACTGGGCGCCGAGAGCAAACTCGACGTGCAGGTCGTCAGCA
CCGGCAGCCTCAGCCTTGACCTCGCACTGGGCGTGGGCGGCATTCCGCGTGGCCGCATCACCGAGATCTACGGCCCCGAG
TCGGGCGGCAAGACCACCCTGGCCCTCGCCATCGTCGCGCAGGCCCAGAAAGCGGGCGGCACCTGTGCGTTTATCGACGC
CGAGCACGCGCTCGACCCGGTGTACGCCCGCGCCCTGGGCGTGAACACCGACGAACTGCTGGTGTCGCAGCCCGACAACG
GCGAGCAGGCGCTCGAAATCATGGAACTGCTGGTGCGTTCGGGCGCGATTGATGTGGTGGTCGTGGACTCGGTGGCTGCT
CTGACCCCCCGCGCCGAAATCGAGGGCGACATGGGCGACAGCCTGCCCGGTCTTCAGGCCCGCCTGATGTCGCAGGCGCT
GCGCAAGCTGACGGCGATTCTCTCCAAGACCGGCACCGCCGCCATCTTCATCAACCAGGTTCGCGAGAAAATCGGCGTGA
TGTACGGCAACCCCGAAACCACCACCGGGGGCCGGGCGCTGAAGTTCTACGCCAGCGTGCGCCTCGACGTGCGTAAGATC
GGCCAGCCCACCAAGGTCGGCAACGACGCGGTCGCCAACACCGTCAAGATCAAGACCGTGAAGAACAAGGTCGCCGCCCC
CTTCAAGGAAGTCGAACTCGCGCTGGTCTACGGCAAGGGCTTCGACCAGCTCAGCGACCTCGTGGGCCTGGCCGCCGACA
TGGACATCATCAAGAAGGCCGGCAGCTTCTACTCCTACGGCGACGAGCGCATCGGCCAGGGCAAGGAAAAGACCATCGCC
TACATCGCCGAGCGCCCCGAGATGGAGCAGGAAATCCGCGACCGCGTGATGGCCGCCATCCGCGCGGGCAACGCGGGCGA
AGCACCGGCCCTGGCCCCCGCGCCTGCCGCGCCCGAAGCCGCCGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1
  recA Streptococcus pneumoniae R6

64.706

88.981

0.576
  recA Streptococcus pneumoniae Rx1

64.706

88.981

0.576
  recA Streptococcus pneumoniae D39

64.706

88.981

0.576
  recA Streptococcus pneumoniae TIGR4

64.706

88.981

0.576
  recA Streptococcus mitis SK321

64.396

88.981

0.573
  recA Glaesserella parasuis strain SC1401

64.396

88.981

0.573
  recA Streptococcus mitis NCTC 12261

64.396

88.981

0.573
  recA Acinetobacter baumannii D1279779

62.883

89.807

0.565
  recA Acinetobacter baylyi ADP1

63.81

86.777

0.554
  recA Streptococcus pyogenes NZ131

62.229

88.981

0.554
  recA Streptococcus mutans UA159

61.92

88.981

0.551
  recA Neisseria gonorrhoeae strain FA1090

59.88

92.011

0.551
  recA Neisseria gonorrhoeae MS11

59.88

92.011

0.551
  recA Neisseria gonorrhoeae MS11

59.88

92.011

0.551
  recA Latilactobacillus sakei subsp. sakei 23K

61.61

88.981

0.548
  recA Bacillus subtilis subsp. subtilis str. 168

59.697

90.909

0.543
  recA Vibrio cholerae strain A1552

60.123

89.807

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.123

89.807

0.54
  recA Lactococcus lactis subsp. cremoris KW2

57.817

93.388

0.54
  recA Ralstonia pseudosolanacearum GMI1000

61.688

84.848

0.523
  recA Helicobacter pylori 26695

54.651

94.766

0.518
  recA Helicobacter pylori strain NCTC11637

54.651

94.766

0.518
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.81

94.49

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.177

87.052

0.515
  recA Pseudomonas stutzeri DSM 10701

56

89.532

0.501