Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BDGL_001444 Genome accession   NC_016603
Coordinates   1550935..1551981 (+) Length   348 a.a.
NCBI ID   YP_004995712.1    Uniprot ID   -
Organism   Acinetobacter pittii PHEA-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1545935..1556981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_001438 kynU 1546521..1547771 (-) 1251 YP_004995706.1 L-kynurenine hydrolase -
  BDGL_001439 lrp 1547919..1548368 (+) 450 YP_004995707.1 putative AsnC family transcriptional regulator -
  BDGL_001440 guaA 1548398..1548934 (+) 537 YP_004995708.1 GNAT family acetyltransferase -
  BDGL_001441 - 1548971..1549264 (-) 294 YP_004995709.1 hypothetical protein -
  BDGL_001442 yrfG 1549715..1550377 (+) 663 YP_004995710.1 putative HAD superfamily hydrolase -
  BDGL_001443 hslR 1550361..1550789 (+) 429 YP_004995711.1 heat shock protein 15 -
  BDGL_001444 recA 1550935..1551981 (+) 1047 YP_004995712.1 recombinase A Machinery gene
  BDGL_001445 recX 1552041..1552523 (+) 483 YP_004995713.1 regulatory protein -
  BDGL_001446 - 1552948..1553823 (+) 876 YP_004995714.1 hypothetical protein -
  BDGL_001447 lpxA 1553882..1554013 (-) 132 YP_004995715.1 UDP-acetylglucosamine acyltransferase -
  BDGL_001448 lpxA2 1554010..1554639 (-) 630 YP_004995716.1 acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase -
  BDGL_001449 fabZ 1554636..1555121 (-) 486 YP_004995717.1 (3R)-hydroxymyristoyl-ACP dehydratase -
  BDGL_001450 lpxD 1555128..1556198 (-) 1071 YP_004995718.1 UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase -
  BDGL_001451 ompH 1556203..1556703 (-) 501 YP_004995719.1 putative outer membrane protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37679.11 Da        Isoelectric Point: 4.9278

>NTDB_id=42968 BDGL_001444 YP_004995712.1 1550935..1551981(+) (recA) [Acinetobacter pittii PHEA-2]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TRVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIEK
IIREQLLTTGTNGAVQVEDEEEDLLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=42968 BDGL_001444 YP_004995712.1 1550935..1551981(+) (recA) [Acinetobacter pittii PHEA-2]
ATGGATGAGAATAAAAGCAAAGCATTACAGGCCGCGCTAAGTCAAATTGAGAAGCAATTTGGCAAAAATACGGTGATGCG
TCTCGGTGACAACACTGTTCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTGACTTTAGATATTGCATTGGGGATTGGCG
GTTTACCGAAAGGTCGTATCGTTGAGATTTATGGTCCAGAATCTTCTGGTAAAACCACAATGACTCTCCAAGCGATTGCA
CAATGTCAAAAAGCTGGTGGTACTTGTGCATTTATCGATGCAGAACACGCATTAGATCCACAATATGCACGTAAGCTGGG
CGTGGACATTGATAATCTACTTGTATCGCAACCAGATAACGGTGAACAAGCACTCGAGATTGCAGACATGCTAGTTCGCT
CTGGTGCAATTGATTTAATCGTTGTCGACTCAGTTGCTGCTCTTACTCCTAAAGCAGAAATTGAAGGCGAAATGGGTGAC
TCTCACATGGGCTTGCAAGCTCGCTTAATGAGTCAGGCATTACGTAAAATTACGGGTAACGCTAAACGCTCGAACTGTAT
GGTTATTTTCATTAACCAGATCCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAGACTACGACTGGTGGTAACGCAT
TGAAGTTCTATGCTTCTGTACGTTTAGATATCCGCCGTATTGGTCAGGTCAAAGAAGGTGATGAAATCATCGGCTCTGAA
ACTCGAGTTAAAGTTGTTAAAAACAAAATGGCTCCTCCTTTTAAAGAAGCTATTTTCCAAATCCTATATGGTAAAGGTAC
AAACCAGCTTGGCGAACTTGTAGATTTAGCTGTACAACAAGATATCGTGCAAAAAGCAGGCGCTTGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTTATCCGCCACTTTGAAGAAAATCCTCAAATGGCTGGAGAAATTGAAAAA
ATTATCCGTGAACAACTGCTAACTACGGGTACTAATGGTGCTGTACAAGTGGAAGATGAAGAAGAAGATCTTCTATTAGA
GTCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

96.562

100

0.968
  recA Acinetobacter baylyi ADP1

92.837

100

0.931
  recA Pseudomonas stutzeri DSM 10701

75.602

95.402

0.721
  recA Vibrio cholerae strain A1552

74.006

93.966

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.006

93.966

0.695
  recA Glaesserella parasuis strain SC1401

71.914

93.103

0.67
  recA Neisseria gonorrhoeae MS11

66.092

100

0.661
  recA Neisseria gonorrhoeae MS11

66.092

100

0.661
  recA Neisseria gonorrhoeae strain FA1090

66.092

100

0.661
  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.253

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

98.563

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.115

0.609
  recA Helicobacter pylori strain NCTC11637

63.914

93.966

0.601
  recA Helicobacter pylori 26695

63.609

93.966

0.598
  recA Streptococcus mitis SK321

59.531

97.989

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

91.092

0.583
  recA Streptococcus mitis NCTC 12261

57.183

100

0.583
  recA Streptococcus mutans UA159

61.89

94.253

0.583
  recA Streptococcus pyogenes NZ131

61.538

93.391

0.575
  recA Streptococcus pneumoniae D39

61.043

93.678

0.572
  recA Streptococcus pneumoniae Rx1

61.043

93.678

0.572
  recA Streptococcus pneumoniae R6

61.043

93.678

0.572
  recA Streptococcus pneumoniae TIGR4

61.043

93.678

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.529

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.816

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.241

0.546

Multiple sequence alignment