Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | GLV80_RS12360 | Genome accession | NZ_CP049958 |
| Coordinates | 2639971..2641017 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain ATCC 43255 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2590055..2649235 | 2639971..2641017 | within | 0 |
Gene organization within MGE regions
Location: 2590055..2649235
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GLV80_RS12125 (GLV80_12125) | - | 2590918..2591904 (-) | 987 | WP_009902440.1 | phage tail protein | - |
| GLV80_RS12130 (GLV80_12130) | - | 2591905..2592603 (-) | 699 | WP_003428156.1 | putative phage tail protein | - |
| GLV80_RS12135 (GLV80_12135) | - | 2592600..2593652 (-) | 1053 | WP_009902437.1 | baseplate J/gp47 family protein | - |
| GLV80_RS12140 (GLV80_12140) | - | 2593645..2594073 (-) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| GLV80_RS12145 (GLV80_12145) | - | 2594073..2594399 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| GLV80_RS12150 (GLV80_12150) | - | 2594415..2595944 (-) | 1530 | WP_009902435.1 | NlpC/P60 family protein | - |
| GLV80_RS12155 (GLV80_12155) | - | 2596226..2596648 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| GLV80_RS12160 (GLV80_12160) | - | 2596648..2599101 (-) | 2454 | WP_003438437.1 | hypothetical protein | - |
| GLV80_RS12165 (GLV80_12165) | - | 2599101..2599268 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| GLV80_RS12170 (GLV80_12170) | - | 2599295..2599741 (-) | 447 | WP_009902432.1 | phage tail assembly chaperone | - |
| GLV80_RS12175 (GLV80_12175) | - | 2599867..2600295 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| GLV80_RS12180 (GLV80_12180) | - | 2600309..2601373 (-) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| GLV80_RS12185 (GLV80_12185) | - | 2601378..2601821 (-) | 444 | WP_009902429.1 | phage tail terminator family protein | - |
| GLV80_RS12190 (GLV80_12190) | - | 2602070..2602510 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| GLV80_RS12195 (GLV80_12195) | - | 2602614..2602811 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| GLV80_RS12200 (GLV80_12200) | - | 2602980..2603300 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| GLV80_RS12205 (GLV80_12205) | - | 2603382..2603888 (+) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| GLV80_RS12210 (GLV80_12210) | - | 2604589..2605344 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| GLV80_RS12215 (GLV80_12215) | - | 2605487..2605915 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| GLV80_RS12220 (GLV80_12220) | - | 2606336..2606536 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| GLV80_RS12225 (GLV80_12225) | - | 2606719..2607873 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| GLV80_RS12230 (GLV80_12230) | - | 2608124..2608945 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| GLV80_RS12235 (GLV80_12235) | - | 2609021..2610409 (-) | 1389 | WP_009902424.1 | two-component system sensor histidine kinase | - |
| GLV80_RS12240 (GLV80_12240) | - | 2610544..2611302 (-) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| GLV80_RS12245 (GLV80_12245) | - | 2611304..2612020 (-) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| GLV80_RS12250 (GLV80_12250) | - | 2612022..2612729 (-) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| GLV80_RS12255 (GLV80_12255) | - | 2612845..2613381 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| GLV80_RS12260 (GLV80_12260) | - | 2613483..2614553 (-) | 1071 | WP_009902421.1 | DUF4097 family beta strand repeat-containing protein | - |
| GLV80_RS12265 (GLV80_12265) | - | 2614546..2615676 (-) | 1131 | WP_032512360.1 | DUF1700 domain-containing protein | - |
| GLV80_RS12270 (GLV80_12270) | - | 2615663..2615995 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| GLV80_RS12275 (GLV80_12275) | - | 2616194..2617315 (+) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| GLV80_RS12280 (GLV80_12280) | - | 2617443..2619341 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| GLV80_RS12285 (GLV80_12285) | - | 2619656..2620432 (+) | 777 | WP_009902419.1 | 3'-5' exonuclease | - |
| GLV80_RS12290 (GLV80_12290) | - | 2620524..2621276 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| GLV80_RS12295 (GLV80_12295) | galT | 2621437..2622387 (-) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| GLV80_RS12300 (GLV80_12300) | - | 2622772..2623968 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| GLV80_RS12305 (GLV80_12305) | - | 2624080..2625426 (-) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| GLV80_RS12310 (GLV80_12310) | - | 2625559..2626311 (-) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| GLV80_RS12315 (GLV80_12315) | - | 2626459..2628036 (-) | 1578 | WP_009902415.1 | PTS transporter subunit EIIC | - |
| GLV80_RS12320 (GLV80_12320) | - | 2628448..2628900 (-) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| GLV80_RS12325 (GLV80_12325) | purB | 2629211..2630656 (-) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| GLV80_RS12330 (GLV80_12330) | - | 2630800..2631708 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| GLV80_RS12335 (GLV80_12335) | - | 2631965..2632789 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| GLV80_RS12340 (GLV80_12340) | lepB | 2632829..2633359 (+) | 531 | WP_009902411.1 | signal peptidase I | - |
| GLV80_RS12345 (GLV80_12345) | - | 2633441..2635222 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| GLV80_RS12350 (GLV80_12350) | - | 2635604..2637940 (-) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| GLV80_RS12355 (GLV80_12355) | rny | 2638254..2639795 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| GLV80_RS12360 (GLV80_12360) | recA | 2639971..2641017 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| GLV80_RS12365 (GLV80_12365) | pgsA | 2641305..2641847 (-) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| GLV80_RS12370 (GLV80_12370) | rimO | 2641834..2643168 (-) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| GLV80_RS12375 (GLV80_12375) | mnmH | 2643162..2644220 (-) | 1059 | WP_009902410.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| GLV80_RS12380 (GLV80_12380) | - | 2644223..2646634 (-) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| GLV80_RS12385 (GLV80_12385) | - | 2646757..2647491 (-) | 735 | WP_003428224.1 | ClpP family protease | - |
| GLV80_RS12390 (GLV80_12390) | dapG | 2647604..2648827 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| GLV80_RS12395 (GLV80_12395) | - | 2648837..2649082 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=429047 GLV80_RS12360 WP_003428218.1 2639971..2641017(-) (recA) [Clostridioides difficile strain ATCC 43255]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=429047 GLV80_RS12360 WP_003428218.1 2639971..2641017(-) (recA) [Clostridioides difficile strain ATCC 43255]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.