Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G4G26_RS08910 Genome accession   NZ_CP049924
Coordinates   1721999..1723045 (+) Length   348 a.a.
NCBI ID   WP_182932257.1    Uniprot ID   -
Organism   Bacillus subtilis strain So1b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1716999..1728045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS08880 (G4G26_08915) efpI 1717007..1717735 (+) 729 WP_003244676.1 EF-P-5 aminopentanone reductase -
  G4G26_RS08885 (G4G26_08920) ymfJ 1717816..1718073 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  G4G26_RS08890 (G4G26_08925) - 1718203..1718994 (+) 792 WP_003220998.1 YmfK family protein -
  G4G26_RS08895 (G4G26_08930) rodZ 1719061..1719927 (+) 867 WP_010886511.1 cell shape determination protein RodZ -
  G4G26_RS08900 (G4G26_08935) pgsA 1719977..1720558 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G4G26_RS08905 (G4G26_08940) cinA 1720576..1721826 (+) 1251 WP_163259995.1 competence/damage-inducible protein A Machinery gene
  G4G26_RS08910 (G4G26_08945) recA 1721999..1723045 (+) 1047 WP_182932257.1 recombinase RecA Machinery gene
  G4G26_RS08915 (G4G26_08950) pbpX 1723213..1724388 (+) 1176 WP_038428981.1 serine hydrolase domain-containing protein -
  G4G26_RS08920 (G4G26_08955) rny 1724664..1726226 (+) 1563 WP_003221010.1 ribonuclease Y -
  G4G26_RS08925 (G4G26_08960) ymdB 1726295..1727089 (+) 795 WP_003245138.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  G4G26_RS08930 (G4G26_08965) spoVS 1727289..1727549 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38073.23 Da        Isoelectric Point: 4.7350

>NTDB_id=428729 G4G26_RS08910 WP_182932257.1 1721999..1723045(+) (recA) [Bacillus subtilis strain So1b]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELEIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=428729 G4G26_RS08910 WP_182932257.1 1721999..1723045(+) (recA) [Bacillus subtilis strain So1b]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTAGCTCTTGATACAGCACTGGGAATTGGCGGAT
ATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATCGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCACTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGTGACATGGGAGATTCT
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGAGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGTGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGAAATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTATGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

99.713

100

0.997
  recA Latilactobacillus sakei subsp. sakei 23K

74.618

93.966

0.701
  recA Streptococcus pneumoniae D39

66.193

100

0.67
  recA Streptococcus pneumoniae R6

66.193

100

0.67
  recA Streptococcus pneumoniae TIGR4

66.193

100

0.67
  recA Streptococcus pneumoniae Rx1

66.193

100

0.67
  recA Streptococcus mutans UA159

66.092

100

0.661
  recA Streptococcus mitis SK321

65.706

99.713

0.655
  recA Streptococcus mitis NCTC 12261

68.485

94.828

0.649
  recA Streptococcus pyogenes NZ131

67.378

94.253

0.635
  recA Neisseria gonorrhoeae strain FA1090

63.295

99.425

0.629
  recA Neisseria gonorrhoeae MS11

63.295

99.425

0.629
  recA Neisseria gonorrhoeae MS11

63.295

99.425

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

62.791

98.851

0.621
  recA Helicobacter pylori strain NCTC11637

62.791

98.851

0.621
  recA Ralstonia pseudosolanacearum GMI1000

64.742

94.54

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.696

98.276

0.606
  recA Glaesserella parasuis strain SC1401

60.58

99.138

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.966

0.598
  recA Vibrio cholerae strain A1552

60.465

98.851

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.465

98.851

0.598
  recA Acinetobacter baumannii D1279779

60.947

97.126

0.592
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Acinetobacter baylyi ADP1

62.422

92.529

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

92.816

0.56