Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G8A07_RS26280 Genome accession   NZ_CP049919
Coordinates   5702724..5703761 (-) Length   345 a.a.
NCBI ID   WP_195794851.1    Uniprot ID   -
Organism   Roseateles sp. DAIF2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5697724..5708761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8A07_RS26250 (G8A07_26260) - 5697899..5698639 (-) 741 WP_195794845.1 TerC family protein -
  G8A07_RS26255 (G8A07_26265) sucD 5698849..5699742 (-) 894 WP_195794846.1 succinate--CoA ligase subunit alpha -
  G8A07_RS26260 (G8A07_26270) sucC 5699763..5700923 (-) 1161 WP_195794847.1 ADP-forming succinate--CoA ligase subunit beta -
  G8A07_RS26265 (G8A07_26275) - 5700948..5701541 (-) 594 WP_195794848.1 DUF2889 domain-containing protein -
  G8A07_RS26270 (G8A07_26280) - 5701709..5702227 (-) 519 WP_195794849.1 regulatory protein RecX -
  G8A07_RS26275 (G8A07_26285) - 5702224..5702718 (-) 495 WP_195794850.1 nuclear transport factor 2 family protein -
  G8A07_RS26280 (G8A07_26290) recA 5702724..5703761 (-) 1038 WP_195794851.1 recombinase RecA Machinery gene
  G8A07_RS26285 (G8A07_26295) - 5703898..5704569 (+) 672 WP_195794852.1 response regulator transcription factor -
  G8A07_RS26290 (G8A07_26300) - 5704673..5706184 (+) 1512 WP_195794853.1 sensor histidine kinase -
  G8A07_RS26295 (G8A07_26305) rodA 5706194..5707348 (-) 1155 WP_195794854.1 rod shape-determining protein RodA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36865.54 Da        Isoelectric Point: 5.0434

>NTDB_id=428693 G8A07_RS26280 WP_195794851.1 5702724..5703761(-) (recA) [Roseateles sp. DAIF2]
MDAPVKNANTEKAKALQAALAQIEKQFGKGSIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAQMQKLQGVCAFIDAEHALDVQYAQKLGVNLQDLLISQPDTGEQALEIVDALVRSGSVDLIIIDSVAALTPKA
ELEGEMGDSLPGLQARLMSQALRKLTATIKKTNCTVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKK
GEEVIGSETKVKVVKNKVSPPFKTAEFDILYGEGISREGEIIDMGVVAKVVDKAGAWYAYGGEKIGQGKDNAREFLRENP
DIAVEIENKIRESLGVPLLGVSAAE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=428693 G8A07_RS26280 WP_195794851.1 5702724..5703761(-) (recA) [Roseateles sp. DAIF2]
ATGGATGCCCCCGTCAAAAACGCCAATACCGAAAAAGCCAAGGCCCTGCAGGCCGCTCTTGCCCAGATCGAAAAGCAGTT
CGGCAAGGGCTCCATCATGCGCCTGGGCGAGGGCGAGGTGATCGAGGACATCCAGGTCGTCTCCACCGGCTCGCTGGGCC
TGGACATCGCGCTGGGCGTCGGTGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGTCCGGAATCCTCCGGCAAGACC
ACCCTGACCCTGCAGGTGATCGCCCAGATGCAGAAGCTGCAGGGTGTCTGCGCCTTCATCGATGCCGAGCATGCGCTGGA
CGTGCAGTACGCGCAGAAGCTGGGCGTCAACCTGCAGGACCTGCTGATCAGCCAGCCCGACACCGGCGAGCAGGCGCTGG
AGATCGTCGATGCGCTGGTGCGCTCCGGTTCGGTGGACCTGATCATCATCGACTCGGTGGCCGCGCTGACGCCCAAGGCC
GAACTCGAAGGCGAGATGGGCGACTCCCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGACCGC
CACGATCAAGAAGACCAACTGCACGGTCGTCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCTCGCCCG
AAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCTCGATCAAGAAG
GGCGAGGAGGTGATCGGCTCCGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCTCGCCCCCGTTCAAGACCGCCGAGTT
CGACATCCTCTACGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGGTCGCCAAGGTGGTCGACAAGG
CCGGCGCCTGGTATGCCTATGGTGGCGAGAAGATCGGCCAGGGCAAGGACAACGCCCGCGAGTTCCTGCGCGAGAACCCC
GACATCGCGGTCGAGATCGAGAACAAGATCCGCGAATCGCTGGGCGTGCCGCTGCTGGGCGTGAGCGCCGCGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.716

93.913

0.777
  recA Neisseria gonorrhoeae strain FA1090

72.256

95.072

0.687
  recA Neisseria gonorrhoeae MS11

72.256

95.072

0.687
  recA Neisseria gonorrhoeae MS11

72.256

95.072

0.687
  recA Glaesserella parasuis strain SC1401

73.148

93.913

0.687
  recA Pseudomonas stutzeri DSM 10701

72.086

94.493

0.681
  recA Acinetobacter baylyi ADP1

72.446

93.623

0.678
  recA Acinetobacter baumannii D1279779

71.517

93.623

0.67
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.939

94.493

0.661
  recA Vibrio cholerae strain A1552

69.939

94.493

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

95.362

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

95.942

0.623
  recA Helicobacter pylori 26695

64.634

95.072

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

63.554

96.232

0.612
  recA Helicobacter pylori strain NCTC11637

64.329

95.072

0.612
  recA Streptococcus mitis SK321

57.88

100

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

61.094

95.362

0.583
  recA Streptococcus mutans UA159

59.821

97.391

0.583
  recA Lactococcus lactis subsp. cremoris KW2

58.824

98.551

0.58
  recA Streptococcus pneumoniae Rx1

59.403

97.101

0.577
  recA Streptococcus pneumoniae D39

59.403

97.101

0.577
  recA Streptococcus pneumoniae R6

59.403

97.101

0.577
  recA Streptococcus pneumoniae TIGR4

59.403

97.101

0.577
  recA Streptococcus mitis NCTC 12261

58.529

98.551

0.577
  recA Streptococcus pyogenes NZ131

58.806

97.101

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

93.043

0.559