Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G7047_RS26075 Genome accession   NZ_CP049910
Coordinates   5722485..5723579 (-) Length   364 a.a.
NCBI ID   WP_166311224.1    Uniprot ID   -
Organism   Diaphorobacter sp. HDW4A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5717485..5728579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7047_RS26060 (G7047_26065) - 5718577..5721135 (+) 2559 WP_166311221.1 DUF1631 family protein -
  G7047_RS26065 (G7047_26070) - 5721166..5721663 (+) 498 WP_166311222.1 DUF4234 domain-containing protein -
  G7047_RS26070 (G7047_26075) recX 5721683..5722156 (-) 474 WP_166311223.1 recombination regulator RecX -
  G7047_RS26075 (G7047_26080) recA 5722485..5723579 (-) 1095 WP_166311224.1 recombinase RecA Machinery gene
  G7047_RS26080 (G7047_26085) - 5723755..5724246 (+) 492 WP_166311225.1 MarR family winged helix-turn-helix transcriptional regulator -
  G7047_RS26085 (G7047_26090) - 5724274..5725665 (-) 1392 WP_166311226.1 FAD-dependent oxidoreductase -
  G7047_RS26090 (G7047_26095) - 5725672..5726256 (-) 585 WP_166311227.1 phosphonate degradation HD-domain oxygenase -
  G7047_RS26095 (G7047_26100) phnY 5726840..5728291 (-) 1452 WP_166311228.1 phosphonoacetaldehyde dehydrogenase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38835.31 Da        Isoelectric Point: 4.7736

>NTDB_id=428579 G7047_RS26075 WP_166311224.1 5722485..5723579(-) (recA) [Diaphorobacter sp. HDW4A]
MDTTVKSTSAADTSEKAKALQAALAQIEKQFGKGTIMRLGEGEKIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPES
SGKTTLTLQVIAEMQKQGGTCAFIDAEHALDTGYAQKLGVNLTEMLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAAL
TPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTG
TIKRGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNARIVEKSGAWYAYNGEKIGQGRDNSREFL
RENRDLAVEIENKVRESLGIPLLGVTSVAAAPGADKDEAGDGEE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=428579 G7047_RS26075 WP_166311224.1 5722485..5723579(-) (recA) [Diaphorobacter sp. HDW4A]
ATGGACACCACTGTGAAGAGCACTTCTGCCGCAGACACCAGCGAGAAGGCCAAGGCCTTGCAGGCTGCGCTGGCCCAGAT
CGAGAAGCAATTCGGCAAGGGCACGATCATGCGCCTGGGCGAAGGCGAGAAGATCGAGGACATCCAGGTCGTCTCCACCG
GCTCGCTGGGTCTGGACATTGCGCTGGGCGTCGGCGGTCTGCCGCGCGGCCGCGTGATCGAAATCTACGGTCCTGAATCC
TCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCAGGGCGGCACCTGCGCCTTCATTGATGCCGA
ACATGCGCTCGACACGGGCTACGCACAGAAACTCGGCGTGAACCTCACCGAAATGCTGATCAGCCAGCCCGACACCGGTG
AGCAGGCGCTTGAAATCGTAGACAGCCTGGTGCGCTCCGGCGCGGTGGACCTGATCGTCGTCGACTCGGTCGCCGCACTC
ACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGTCTGATGAGCCAGGCCCTGCG
CAAGCTCACCGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGT
TCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCCGTGCGCCTCGATATCCGCCGCACCGGC
ACCATCAAACGAGGTGACGAAGCCATCGGCAACGAGACCAAGGTGAAGGTCGTGAAGAACAAGGTCTCGCCCCCGTTCAA
GACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCTCGCGCGAAGGCGAAATCATCGACATGGGCGTGAACGCGCGCA
TCGTTGAAAAGAGCGGTGCATGGTATGCCTACAACGGCGAAAAAATCGGCCAAGGCCGCGACAACTCGCGTGAATTTCTG
CGCGAAAACCGCGACCTCGCCGTCGAGATCGAGAACAAGGTGCGCGAATCGCTCGGCATCCCCCTGCTCGGTGTGACCAG
CGTGGCCGCAGCGCCCGGCGCCGACAAGGATGAGGCGGGAGACGGCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.059

93.681

0.75
  recA Glaesserella parasuis strain SC1401

66.116

99.725

0.659
  recA Vibrio cholerae strain A1552

69.322

93.132

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.322

93.132

0.646
  recA Acinetobacter baumannii D1279779

72.136

88.736

0.64
  recA Pseudomonas stutzeri DSM 10701

72.136

88.736

0.64
  recA Acinetobacter baylyi ADP1

71.827

88.736

0.637
  recA Neisseria gonorrhoeae MS11

70.303

90.659

0.637
  recA Neisseria gonorrhoeae MS11

70.303

90.659

0.637
  recA Neisseria gonorrhoeae strain FA1090

70.303

90.659

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.405

89.56

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.68

92.857

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

65.465

91.484

0.599
  recA Helicobacter pylori strain NCTC11637

65.644

89.56

0.588
  recA Helicobacter pylori 26695

65.644

89.56

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

63.303

89.835

0.569
  recA Streptococcus pyogenes NZ131

62.006

90.385

0.56
  recA Lactococcus lactis subsp. cremoris KW2

61.329

90.934

0.558
  recA Streptococcus pneumoniae R6

60.725

90.934

0.552
  recA Streptococcus pneumoniae TIGR4

60.725

90.934

0.552
  recA Streptococcus pneumoniae D39

60.725

90.934

0.552
  recA Streptococcus pneumoniae Rx1

60.725

90.934

0.552
  recA Streptococcus mutans UA159

60.909

90.659

0.552
  recA Streptococcus mitis SK321

60.423

90.934

0.549
  recA Streptococcus mitis NCTC 12261

60.423

90.934

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.581

91.758

0.547