Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G7048_RS13020 Genome accession   NZ_CP049905
Coordinates   2849294..2850388 (-) Length   364 a.a.
NCBI ID   WP_166068552.1    Uniprot ID   -
Organism   Diaphorobacter sp. HDW4B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2844294..2855388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7048_RS13005 (G7048_13000) - 2845173..2847734 (+) 2562 WP_166068548.1 DUF1631 family protein -
  G7048_RS13010 (G7048_13005) - 2848091..2848435 (+) 345 WP_240932971.1 hypothetical protein -
  G7048_RS13015 (G7048_13010) recX 2848452..2848934 (-) 483 WP_166068551.1 recombination regulator RecX -
  G7048_RS13020 (G7048_13015) recA 2849294..2850388 (-) 1095 WP_166068552.1 recombinase RecA Machinery gene
  G7048_RS13025 (G7048_13020) - 2850573..2851067 (+) 495 WP_166068553.1 MarR family winged helix-turn-helix transcriptional regulator -
  G7048_RS13030 (G7048_13025) - 2851090..2852481 (-) 1392 WP_166068554.1 FAD-dependent oxidoreductase -
  G7048_RS13035 (G7048_13030) - 2852488..2853111 (-) 624 WP_166070951.1 phosphonate degradation HD-domain oxygenase -
  G7048_RS13040 (G7048_13035) phnY 2853727..2855178 (-) 1452 WP_166068555.1 phosphonoacetaldehyde dehydrogenase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38876.38 Da        Isoelectric Point: 4.7547

>NTDB_id=428551 G7048_RS13020 WP_166068552.1 2849294..2850388(-) (recA) [Diaphorobacter sp. HDW4B]
MDTTVKSTAGTVDNSEKAKALQAALAQIEKQFGKGTIMRLGEGDKFDDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLNDILISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAA
LTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRT
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNARIVEKSGAWYAYNGEKIGQGRDNSREF
LRENRDLAIEIENKVRESLGIPLLGVTSVAAAPGAASDDEIVEE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=428551 G7048_RS13020 WP_166068552.1 2849294..2850388(-) (recA) [Diaphorobacter sp. HDW4B]
ATGGACACCACTGTGAAGAGCACCGCAGGCACTGTTGACAACAGCGAAAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCA
GATCGAAAAGCAATTCGGCAAGGGCACGATCATGCGCCTTGGCGAAGGCGACAAGTTCGATGACATCCAGGTCGTGTCCA
CCGGCTCGCTGGGTCTTGATGTGGCGCTCGGCGTGGGCGGTCTGCCACGTGGCCGCGTGATCGAAATCTACGGTCCTGAG
TCTTCCGGCAAGACCACGCTCACGCTGCAAGTGATCGCCGAGATGCAAAAGCAAGGCGGCACCTGCGCGTTCATCGATGC
GGAACATGCGCTGGACACGTCCTACGCCCAGAAGCTCGGCGTGAACCTGAACGACATCCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCACTTGAAATCGTCGACTCGCTGGTGCGTTCCGGCGCGGTGGATCTGATCGTCATCGACTCGGTCGCCGCG
CTCACACCCAAGGCCGAAATCGAAGGCGAAATGGGCGACGCCCTGCCCGGCCTGCAAGCCCGTCTGATGAGCCAGGCCCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCCGTGCGTCTGGACATCCGCCGCACC
GGCACCATCAAGAAGGGCGACGAAGCCATCGGCAACGAAACCAAGGTGAAGGTTGTGAAGAACAAGGTCTCGCCTCCGTT
CAAGACGGCGGAGTTCGACATCCTGTTCGGCGAAGGCATCTCGCGCGAAGGCGAAATCATCGACATGGGCGTGAACGCGC
GCATCGTCGAAAAGAGCGGCGCATGGTATGCCTACAACGGCGAAAAGATCGGCCAGGGCCGCGACAACTCGCGTGAATTC
CTGCGCGAAAACCGCGACCTCGCCATCGAGATCGAGAACAAGGTGCGCGAATCGCTGGGCATTCCACTGCTGGGTGTGAC
CAGCGTGGCAGCGGCTCCCGGAGCAGCCTCCGACGACGAGATCGTCGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.043

88.736

0.728
  recA Pseudomonas stutzeri DSM 10701

71.779

89.56

0.643
  recA Glaesserella parasuis strain SC1401

66.762

95.879

0.64
  recA Vibrio cholerae strain A1552

67.544

93.956

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.544

93.956

0.635
  recA Acinetobacter baumannii D1279779

70.552

89.56

0.632
  recA Neisseria gonorrhoeae MS11

69.394

90.659

0.629
  recA Neisseria gonorrhoeae MS11

69.394

90.659

0.629
  recA Neisseria gonorrhoeae strain FA1090

69.394

90.659

0.629
  recA Acinetobacter baylyi ADP1

70.245

89.56

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.875

92.582

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.173

90.385

0.607
  recA Bacillus subtilis subsp. subtilis str. 168

65.165

91.484

0.596
  recA Helicobacter pylori 26695

64.634

90.11

0.582
  recA Helicobacter pylori strain NCTC11637

64.634

90.11

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

63.914

89.835

0.574
  recA Lactococcus lactis subsp. cremoris KW2

60.725

90.934

0.552
  recA Streptococcus pyogenes NZ131

60.79

90.385

0.549
  recA Streptococcus pneumoniae D39

59.517

90.934

0.541
  recA Streptococcus pneumoniae TIGR4

59.517

90.934

0.541
  recA Streptococcus pneumoniae R6

59.517

90.934

0.541
  recA Streptococcus pneumoniae Rx1

59.517

90.934

0.541
  recA Streptococcus mutans UA159

59.697

90.659

0.541
  recA Streptococcus mitis NCTC 12261

59.215

90.934

0.538
  recA Streptococcus mitis SK321

59.215

90.934

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.912

90.934

0.536