Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G7081_RS01725 Genome accession   NZ_CP049886
Coordinates   358517..359545 (-) Length   342 a.a.
NCBI ID   WP_166006860.1    Uniprot ID   A0A6G8ALR5
Organism   Vagococcus coleopterorum strain HDW17A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 353517..364545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7081_RS01710 (G7081_01710) - 355370..355780 (-) 411 WP_166006854.1 YlbF family regulator -
  G7081_RS01715 (G7081_01715) - 355797..356597 (-) 801 WP_166006856.1 TIGR00282 family metallophosphoesterase -
  G7081_RS01720 (G7081_01720) rny 356716..358272 (-) 1557 WP_166006858.1 ribonuclease Y -
  G7081_RS01725 (G7081_01725) recA 358517..359545 (-) 1029 WP_166006860.1 recombinase RecA Machinery gene
  G7081_RS01730 (G7081_01730) - 359615..360877 (-) 1263 WP_166006862.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  G7081_RS01735 (G7081_01735) pgsA 360987..361526 (-) 540 WP_420824507.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G7081_RS01740 (G7081_01740) - 361596..362450 (-) 855 WP_166006866.1 helix-turn-helix domain-containing protein -
  G7081_RS01745 (G7081_01745) yfmH 362564..363868 (-) 1305 WP_166006868.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36972.08 Da        Isoelectric Point: 4.8475

>NTDB_id=428345 G7081_RS01725 WP_166006860.1 358517..359545(-) (recA) [Vagococcus coleopterorum strain HDW17A]
MADDRKVALDAALKKIEKNFGKGSIMKLGEKVDTQVQTIPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAIA
EVQKQGGTAAFIDAEHALDPAYAEKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATVRLEVRRAEQLKNGTDIIGNR
TKVKVVKNKVAPPFKVAEVDLMYGEGISKAGELLDMASDRDIVDKSGAWYSYKEERIGQGRENAKKYIMDHPDMFAEIEQ
RVRNEYGIGEEVADETTETEAE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=428345 G7081_RS01725 WP_166006860.1 358517..359545(-) (recA) [Vagococcus coleopterorum strain HDW17A]
ATGGCAGATGATCGTAAAGTAGCATTAGATGCTGCGTTGAAAAAAATAGAAAAAAACTTCGGTAAAGGTTCAATTATGAA
GCTTGGTGAAAAAGTGGATACACAAGTACAAACAATCCCAAGTGGTTCGTTGGCACTGGATGTTGCTTTGGGTGTAGGTG
GTTATCCACGCGGGCGTATTGTTGAAATTTACGGACCAGAAAGTTCGGGTAAAACAACTGTGGCGTTACATGCGATTGCA
GAAGTTCAAAAACAAGGTGGTACAGCAGCGTTTATCGATGCCGAGCATGCTTTGGATCCAGCTTATGCCGAAAAACTAGG
CGTTAACATTGATGAGCTATTATTATCACAACCAGACACAGGGGAGCAAGGTTTAGAAATTGCTGACGCTTTAGTATCCA
GTGGAGCAATTGATATTGTGGTTATCGACTCGGTAGCTGCTTTAGTACCTCGTGCGGAAATTGATGGCGAAATGGGTGAC
TCTCACGTAGGGTTACAAGCTCGTTTAATGTCTCAAGCTCTTAGAAAATTATCAGGTTCTATTAATAAAACAAAAACAAT
TGCGTTATTTATTAACCAAATTCGTGAAAAAGTTGGCGTTATGTTTGGTAATCCAGAAATTACACCGGGTGGGCGAGCTC
TTAAATTCTATGCGACTGTTCGTTTAGAAGTTCGTCGTGCTGAGCAATTGAAAAATGGCACGGATATTATTGGTAATAGA
ACAAAAGTTAAAGTAGTAAAAAATAAAGTTGCGCCACCATTCAAAGTAGCAGAAGTTGATTTGATGTATGGTGAAGGTAT
TTCTAAAGCAGGGGAACTTTTAGATATGGCATCAGATCGTGATATCGTAGATAAAAGTGGTGCATGGTACTCTTATAAAG
AAGAACGAATTGGTCAAGGTCGTGAAAATGCTAAAAAATATATCATGGATCATCCAGATATGTTTGCCGAAATTGAACAG
CGTGTTCGTAATGAGTATGGTATTGGTGAAGAAGTTGCTGATGAAACAACGGAAACCGAAGCTGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8ALR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80

99.415

0.795
  recA Bacillus subtilis subsp. subtilis str. 168

77.846

95.029

0.74
  recA Streptococcus pneumoniae Rx1

71.72

100

0.719
  recA Streptococcus pneumoniae D39

71.72

100

0.719
  recA Streptococcus pneumoniae R6

71.72

100

0.719
  recA Streptococcus pneumoniae TIGR4

71.72

100

0.719
  recA Streptococcus mitis SK321

71.304

100

0.719
  recA Streptococcus mitis NCTC 12261

71.014

100

0.716
  recA Streptococcus mutans UA159

69.942

100

0.708
  recA Streptococcus pyogenes NZ131

72.205

96.784

0.699
  recA Lactococcus lactis subsp. cremoris KW2

68.693

96.199

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.443

95.614

0.626
  recA Neisseria gonorrhoeae MS11

61.047

100

0.614
  recA Neisseria gonorrhoeae MS11

61.047

100

0.614
  recA Neisseria gonorrhoeae strain FA1090

61.047

100

0.614
  recA Acinetobacter baylyi ADP1

60

100

0.605
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.043

94.152

0.594
  recA Glaesserella parasuis strain SC1401

62.733

94.152

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.094

96.199

0.588
  recA Ralstonia pseudosolanacearum GMI1000

64.217

91.52

0.588
  recA Acinetobacter baumannii D1279779

61.231

95.029

0.582
  recA Vibrio cholerae strain A1552

60.681

94.444

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.681

94.444

0.573
  recA Pseudomonas stutzeri DSM 10701

60.681

94.444

0.573
  recA Helicobacter pylori strain NCTC11637

58.912

96.784

0.57
  recA Helicobacter pylori 26695

58.912

96.784

0.57