Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G7078_RS07760 Genome accession   NZ_CP049871
Coordinates   1490299..1491378 (-) Length   359 a.a.
NCBI ID   WP_166094702.1    Uniprot ID   -
Organism   Sphingomonas sinipercae strain HDW15C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1485299..1496378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7078_RS07740 (G7078_07735) - 1485742..1486713 (-) 972 WP_166094693.1 KpsF/GutQ family sugar-phosphate isomerase -
  G7078_RS07745 (G7078_07740) - 1486803..1488119 (+) 1317 WP_166094695.1 dicarboxylate/amino acid:cation symporter -
  G7078_RS07750 (G7078_07745) - 1488122..1488958 (-) 837 WP_166094697.1 class I SAM-dependent methyltransferase -
  G7078_RS07755 (G7078_07750) - 1489008..1490276 (+) 1269 WP_166094700.1 multidrug effflux MFS transporter -
  G7078_RS07760 (G7078_07755) recA 1490299..1491378 (-) 1080 WP_166094702.1 recombinase RecA Machinery gene
  G7078_RS07765 (G7078_07760) - 1491558..1492163 (+) 606 WP_166094705.1 isoprenylcysteine carboxylmethyltransferase family protein -
  G7078_RS07770 (G7078_07765) - 1492166..1493380 (+) 1215 WP_246166542.1 glycosyltransferase family 87 protein -
  G7078_RS07775 (G7078_07770) dnaG 1493543..1495408 (+) 1866 WP_166094709.1 DNA primase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38368.86 Da        Isoelectric Point: 5.3576

>NTDB_id=428293 G7078_RS07760 WP_166094702.1 1490299..1491378(-) (recA) [Sphingomonas sinipercae strain HDW15C]
MAAQLKVIGSGLESASMDRQKALEAALAQIDRAFGKGSAMKLGSREKMEIEVVSTGSLGLDIALGVGGLPRGRVIEIYGP
ESSGKTTLALHAIAEAQKVGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAVDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISRSRCTVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGQIKDRDDIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGVSKVGEILDLGVKAGLVEKSGAWFSYDSIRIGQGRENSKQ
YLTENPEIANRIERAIRGKTEEVGEALMVGPTGEDEGAE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=428293 G7078_RS07760 WP_166094702.1 1490299..1491378(-) (recA) [Sphingomonas sinipercae strain HDW15C]
ATGGCAGCGCAGCTCAAGGTCATCGGCAGCGGATTGGAATCAGCAAGCATGGATCGGCAAAAGGCGCTCGAGGCGGCGCT
TGCGCAAATCGACCGCGCATTCGGCAAGGGCTCGGCAATGAAGCTGGGCAGCCGCGAGAAAATGGAAATCGAAGTGGTCT
CGACCGGCTCGCTCGGTCTCGACATCGCCCTTGGCGTGGGCGGCTTGCCGCGCGGCCGGGTGATCGAGATTTACGGGCCG
GAAAGCTCTGGCAAGACGACGCTTGCGCTGCACGCGATTGCCGAAGCGCAGAAGGTTGGTGGGACCGCCGCCTTCGTCGA
CGCGGAACATGCGCTCGACCCGGTGTATGCGAAGAAGCTTGGCGTCGACATCGACGAGCTGATCGTATCGCAGCCGGATA
CGGGCGAGCAGGCGCTGGAAATCGTCGACACGCTGGTGCGGTCGAATGCCGTCGACGTGCTGGTGGTCGATTCGGTCGCT
GCGCTGGTGCCGCGGGCGGAAATCGAGGGCGAGATGGGCGACAGCCACGTCGGCCTGCAGGCCCGCCTGATGAGCCAGGC
GCTGCGCAAGCTGACCGGATCGATCAGCCGTTCGCGCTGCACCGTCATCTTCATCAACCAGGTACGGATGAAGATCGGCG
TCATGTACGGCAACCCGGAGACGACGACGGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTCCGCCTCGACATTCGCCGC
ACGGGCCAGATCAAGGACCGCGACGATATCGTCGGCAACACCACCCGGGTGAAGGTGGTCAAGAACAAGGTCGCGCCGCC
GTTCAAGCAGGTCGAATTCGACATCATGTACGGCCAGGGCGTGTCGAAGGTCGGCGAGATCCTCGACCTCGGCGTCAAGG
CCGGCCTGGTCGAGAAGTCGGGCGCGTGGTTCAGCTATGACTCGATCCGCATCGGCCAGGGGCGCGAGAACTCCAAGCAG
TATCTCACGGAAAATCCCGAGATCGCCAACCGGATCGAAAGGGCGATCCGGGGCAAGACCGAGGAAGTCGGCGAAGCGCT
GATGGTCGGGCCTACGGGCGAGGACGAAGGCGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.343

94.15

0.643
  recA Ralstonia pseudosolanacearum GMI1000

69.753

90.251

0.63
  recA Glaesserella parasuis strain SC1401

70.533

88.858

0.627
  recA Neisseria gonorrhoeae MS11

69.35

89.972

0.624
  recA Neisseria gonorrhoeae MS11

69.35

89.972

0.624
  recA Neisseria gonorrhoeae strain FA1090

69.35

89.972

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70

89.136

0.624
  recA Vibrio cholerae strain A1552

70

89.136

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.467

93.036

0.618
  recA Acinetobacter baumannii D1279779

68.75

89.136

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.848

95.543

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

68.125

89.136

0.607
  recA Acinetobacter baylyi ADP1

68.125

89.136

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

62.029

96.1

0.596
  recA Helicobacter pylori strain NCTC11637

63.03

91.922

0.579
  recA Helicobacter pylori 26695

63.03

91.922

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.692

90.529

0.577
  recA Streptococcus pneumoniae TIGR4

62.577

90.808

0.568
  recA Streptococcus pneumoniae Rx1

62.577

90.808

0.568
  recA Streptococcus pneumoniae D39

62.577

90.808

0.568
  recA Streptococcus pneumoniae R6

62.577

90.808

0.568
  recA Streptococcus mitis NCTC 12261

62.963

90.251

0.568
  recA Streptococcus mitis SK321

62.654

90.251

0.565
  recA Streptococcus pyogenes NZ131

61.656

90.808

0.56
  recA Streptococcus mutans UA159

60.494

90.251

0.546
  recA Lactococcus lactis subsp. cremoris KW2

60.185

90.251

0.543